AMCG00006063 (ctxn1,LOC108441290,LOC106573568)


Basic Information

Item Value
gene id AMCG00006063
gene name ctxn1,LOC108441290,LOC106573568
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12843765 ~ 12854803 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006063
ATGGGGGGTCACAAAGCAGCAGATGCATATGACACCAATAATAAAGGAGTGAAAAGGAACCTGGTATCGGAGTCCCACCGGAGCGCCTGCTGGCCTACAGCTGAAGAGAACCAGGCTTTGAGCGGAGGATCCTGTGTggaggttttgttttccaagacGGAGCCACCTGTGCCCCTCTGCCCCAGCTCCTCTGAGACCTGCCCCCAGGCCCTCGCTGATGCCATGGTGCTGCTGTCGAGACGAACCGCTGATGTGGCACAATTGGCCGAGCTGTGGAGCTTCTTTGAGAAGGAACTCGGCCCACAGCCGGCAAGACAGAGAACTGTTGGTGTTGTGGGGCGGCACTGGAGTGATGTCATGGTTTTCTCAATCATGCCGCGCTGCCATCTGCCCCAGTCACTGGGCTGTGCTGGCACTGCACCGGCCAGAAGGCACGAGCCCACCTCGATGCCTGCCATTAACCCTGCAACTCCCAAAGGGCGTTTGATGGGGCGGACCCTGGACAGAAGCTGACACGATCTCTGTTCCGCTGATAACCGAGACGCCGCTGATTGACACAGACTGTGGATTGATTGGCACCTTCGCCGGCCTCTTGCACTGTGGATGGACCGATGGAGCAGTGCTGACAGGGCTTTTAGACCGATGACTGATGGGGAAGCCTCAGTAGGAGCTAAGGTCATTGACCGTCAGTCCATCCAGGCGCTGAGGGACATCTGTTTGTAAACAGGGCCTCGGTGTGCTGCATGACCACGCTAACGAAGTACAAAGATGTCTGTCTGTCACCGTCACTTATTTACATAAACGATTGAAGAGCTGCACGTCAAGAATAATAAATTGCCCCCCATTAGAAGTCTGAACACAGACAGTGACAAATCTTACCAAGTCTAAACGATCAGCCTTTGTTGCTTCCAGTTTGCCAACTACGTTACAGGCAGAGCTGGGCAGCTGTAGGTGAGACGGTGCAAACCCTGCTATGGAAATCCTGTGCTGTCTGTAAGCACGTCAGTCACTCTATAGGGATttaagctgctgttttttttgttttcttatcgTGCTGCTGTCCCCCGCCAGCCAGCCTGTCTCCCCTCTGCACGGCACCCAACAACCAGCCAGCCTGCAACCTCTGCCACCCAGCCCCTCGGACCATGAGCGATGTGCCCACACTGGATTATGAGGTGCTGTCCCGGGGCCCCGTGCTCACCGGGGCCCCCACCAGCCCCCCGCTGGCCGGGGACGGGGAGCAGAAAACCGCTTTCGCCTGTGTGGGCCTGCTGCTCCTCTTCCTGGTCTTCCTGCTGGTACGCTGCTTCCGCATCCTCCTGGACCCCTACAGCCGCATGCCCGCTTCGTCCTGGACTGACCACAAGGAGGGGCTAGAGAGGGGCCAGTTTGACTACGCACtggtgtagagagagagatgggggaggaggagagagagagagacgcccTGCTGCCTTAACCCtcactgaaagagagagagagcgagatggGAGACCCTCTTCAGAGCCTGCATCCCTCTCTCCCGCGCCACCAATACATGTTCTCTTATAAAGACTTCCTTCTTCGGGCCATTTGAATGGATGGTAGAGATGGACACAGTTTTTAATCCATTACCCATTTATCAGGTCTAAAACTTACAATTTAGGAGTAGTTCTAAACAAGTTATATGAGCACATTTAAAGGGATTCTCTCTGTATATCCATCTGGGAATGATGAGGCTGTGCGATGTGAAAAACAGCTAAAACTCTTAGTCCAGTTCAATATTATAGCGTAAGAAGACTCTGATAGAGGGTTTCGCTGTGTTTAGCTTAAATATCTAAATCTTGAACTTAGTTTAGTGACGGGAACGGGGATTTGTGTGGGTAGGCGGGTGGGACCCCTATAGAATAATGCTGAAAATGACTGCCTAAGCTTAAAGTGGTGATGTGCACCCCAATTAGTATTGAAATTGCTCCTGAATCGCTTTGAAGGGATAGAGGAATGGGAAACCAATGCACTGCTCTTTCCAAGGTCTATTTCAATCGCGTCACAAGAATAAGTGGCGTCTGCTTTGCTGGGGCTGCGTTGGCCTTGTGATGAGAACAGACGGTTGCTCTGGCTACACAGAGGGGCTCAGATGCAACAGTATGTCTGTGATTCAAAGCCATATCTTTTGAATTTCTGTCTATACGTGTCGCCACCTGTCTTCAAGCCTTACCTTGTCCCTCAGAGCTCGGTGACCTATGTTGTTTAAACTTACgattttagaaatatttaaatctgctttatttttgtattcggGCTCGCGTTATAGAGGCCCTTTTTTGCAGTTGTTCACAATtgggtttttggttttgttcttttcttctttggTTTGTAGTTTCTTCTTCTCTGAGCTACCAAGCCTTTAGAAAATGATCTGAGGAGAAATGTACAGCTAGTGTGGATCagtttgtgctttgtgtgtaaCAGATTTGTAAAGTAGATTGGATATTTTTCCTACTGTTTTTCTTAAGCTGGGCTAATTCTACTGAATAAAAAGGGGGATATTTTTTCTTCACCGCC
>TU195614
CCGGGCAGCGGGGACTCCGGCGCTTGTGGTCGAGGGGTCGATACAGCACAGCAGCCCCACAGCCAAGGGCGTTTGATGGGGCGGACCCTGGACAGAAGCTGACACGATCTCTGTTCCGCTGATAACCGAGACGCCGCTGATTGACACAGACTGTGGATTGATTGGCACCTTCGCCGGCCTCTTGCACTGTGGATGGACCGATGGAGCAGTGCTGACAGGGCTTTTAGACCGATGACTGATGGGGAAGCCTCAGTAGGAGCTAAGGTCATTGACCGTCAGTCCATCCAGGCGCTGAGGGACATCTGTTTGTAAACAGGGCCTCGGTGTGCTGCATGACCACGCTAACGAAGTACAAAGATGTCTGTCTGTCACCGTCACTTATTTACATAAACGATTGAAGAGCTGCACGTCAAGAATAATAAATTGCCCCCCATTAGAAGTCTGAACACAGACAGTGACAAATCTTACCAAGTCTAAACGATCAGCCTTTGTTGCTTCCAGTTTGCCAACTACGTTACAGGCAGAGCTGGGCAGCTGTAGGTGAGACGGTGCAAACCCTGCTATGGAAATCCTGTGCTGTCTGTAAGCACGTCAGTCACTCTATAGGGATttaagctgctgttttttttgttttcttatcgTGCTGCTGTCCCCCGCCAGCCAGCCTGTCTCCCCTCTGCACGGCACCCAACAACCAGCCAGCCTGCAACCTCTGCCACCCAGCCCCTCGGACCATGAGCGATGTGCCCACACTGGATTATGAGGTGCTGTCCCGGGGCCCCGTGCTCACCGGGGCCCCCACCAGCCCCCCGCTGGCCGGGGACGGGGAGCAGAAAACCGCTTTCGCCTGTGTGGGCCTGCTGCTCCTCTTCCTGGTCTTCCTGCTGGTACGCTGCTTCCGCATCCTCCTGGACCCCTACAGCCGCATGCCCGCTTCGTCCTGGACTGACCACAAGGAGGGGCTAGAGAGGGGCCAGTTTGACTACGCACtggtgtagagagagagatgggggaggaggagagagagagagacgcccTGCTGCCTTAACCCtcactgaaagagagagagagcgagatggGAGACCCTCTTCAGAGCCTGCATCCCTCTCTCCCGCGCCACCAATACATGTTCTCTTATAAAGACTTCCTTCTTCGGGCCATTTGAATGGATGGTAGAGATGGACACAGTTTTTAATCCATTACCCATTTATCAGGTCTAAAACTTACAATTTAGGAGTAGTTCTAAACAAGTTATATGAGCACATTTAAAGGGATTCTCTCTGTATATCCATCTGGGAATGATGAGGCTGTGCGATGTGAAAAACAGCTAAAACTCTTAGTCCAGTTCAATATTATAGCGTAAGAAGACTCTGATAGAGGGTTTCGCTGTGTTTAGCTTAAATATCTAAATCTTGAACTTAGTTTAGTGACGGGAACGGGGATTTGTGTGGGTAGGCGGGTGGGACCCCTATAGAATAATGCTGAAAATGACTGCCTAAGCTTAAAGTGGTGATGTGCACCCCAATTAGTATTGAAATTGCTCCTGAATCGCTTTGAAGGGATAGAGGAATGGGAAACCAATGCACTGCTCTTTCCAAGGTCTATTTCAATCGCGTCACAAGAATAAGTGGCGTCTGCTTTGCTGGGGCTGCGTTGGCCTTGTGATGAGAACAGACGGTTGCTCTGGCTACACAGAGGGGCTCAGATGCAACAGTATGTCTGTGATTCAAAGCCATATCTTTTGAATTTCTGTCTATACGTGTCGCCACCTGTCTTCAAGCCTTACCTTGTCCCTCAGAGCTCGGTGACCTATGTTGTTTAAACTTACgattttagaaatatttaaatctgctttatttttgtattcggGCTCGCGTTATAGAGGCCCTTTTTTGCAGTTGTTCACAATtgggtttttggttttgttcttttcttctttggTTTGTAGTTTCTTCTTCTCTGAGCTACCAAGCCTTTAGAAAATGATCTGAGGAGAAATGTACAGCTAGTGTGGATCagtttgtgctttgtgtgtaaCAGATTTGTAAAGTAGATTGGATATTTTTCCTACTGTTTTTCTTAAGCTGGGCTAATTCTACTGAATAAAAAGGGGGATATTT

Function

symbol description
ctxn1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism.

NR:

description
PREDICTED: cortexin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006063 True 2544 mRNA 0.50 5 12843765 12850145
TU195614 False 2120 TUCP 0.49 2 12843778 12854803

Neighbor

gene id symbol gene type direction distance location
AMCG00006064 NA coding downstream 84322 12746929 ~ 12759443 (-)
AMCG00005990 sppl2b,sppl2 coding downstream 107858 12726847 ~ 12735907 (-)
AMCG00005991 NA coding downstream 121016 12717578 ~ 12722749 (-)
AMCG00005988 NA coding downstream 178659 12662352 ~ 12665106 (-)
AMCG00005923 LOC103464111,LOC103138520,LOC102237431,LOC107100952,LOC103373679,LOC105900972,LOC100702697 coding downstream 201574 12628716 ~ 12642191 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding upstream 18108 12872911 ~ 12880597 (-)
AMCG00005938 hnrnpm,LOC105900966 coding upstream 26982 12881785 ~ 12890475 (-)
AMCG00005967 polr2e,LOC107599482,LOC107669821 coding upstream 167558 13022361 ~ 13025617 (-)
AMCG00005948 NA coding upstream 314274 13169077 ~ 13171020 (-)
AMCG00005947 NA coding upstream 318083 13172886 ~ 13181536 (-)
G155284 NA non-coding downstream 97049 12746423 ~ 12746716 (-)
G155235 NA non-coding downstream 232320 12605723 ~ 12611445 (-)
G155183 NA non-coding downstream 396046 12447520 ~ 12447719 (-)
G155073 NA non-coding downstream 717637 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 820093 12003140 ~ 12023672 (-)
G155326 NA non-coding upstream 36304 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 53891 12908694 ~ 12910923 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 173401 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 224682 13079485 ~ 13107493 (-)
G155400 NA non-coding upstream 253009 13107812 ~ 13108067 (-)
AMCG00005992 NA other downstream 132629 12678405 ~ 12711136 (-)
AMCG00005989 NA other downstream 167771 12669256 ~ 12675994 (-)
AMCG00005875 NA other downstream 1467227 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 1482891 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 1504630 11336595 ~ 11339135 (-)
AMCG00005936 march2 other upstream 41751 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 65320 12920123 ~ 12949967 (-)
AMCG00005966 sbno2,LOC106573581 other upstream 181621 13036424 ~ 13051719 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other upstream 268754 13123557 ~ 13156318 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other upstream 713664 13568467 ~ 13583351 (-)

Expression


Co-expression Network