RNA id: CI01000075_01526289_01529484.mRNA


Basic Information

Item Value
RNA id CI01000075_01526289_01529484.mRNA
length 814
RNA type mRNA
GC content 0.46
exon number 6
gene id CI01000075_01526289_01529484
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1526241 ~ 1529656 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAAGCAGAGTGTTTTAGGACTGTGTGATCAGTAAAACGCGCTAATGGACGATGAGGAGGAGACTTATCGATTATGGAAAATTCGCAAGACCATAATGCAGCTCTGCCATGATCGAGGGTTTCTGGTGACCCAGGATGAGCTGGACCAGACCTTGGATGAATTTAAAGGTCAGTTCGGTGACAGGCCCAGTGAGGGGCGACCCAGACGGACGGATCTCACCGTGCTGGTCGCCCACAACGACGACCCCACCGACCAGATGTTTGTTTTCTTTCCAGAGGAGCCTAAAGTGGGCATCAAGACCATTAAGATGTATTGCCAGCGGATGCAGGAAGAAAACATCACTCGGGCCATTATCGTAGTCCAGACGGGCATGACGCCATCTGCTAAACAGTCTTTAGTTGACATGGCACCAAAATACATCCTGGAACAGTTTCTACAGCAAGAGCTGCTAATAAACATCACAGAGCATGAGCTTTTCTTGACTGTCGTCAGTAAACTGAAGGAGAGCCAGTTACCCAGAATTCAGTCTGGAGATCCCGTGGCACGATATTTTGGGCTGAAACGAGGGCAGGTGGTGAAGATCATCCGACCCAGTGAGACGGCTGGACGATACATCACGTACAGACTTGTACAGTGAAGACCAAGCTTTTATTTTTCTTTAACGTCAAGCTTAGATGTGACGGGCTTTTCACTGCGTCTCATGTTCTTTTGTTTTATAATGGGATTCTTGTGATGGACGGCAACTATTATGAATTTAATTTCCCTAAAACTTGAATTTTGTATTATGTTTGTTTTTGCAAAACAACAAA

Function

GO:

id name namespace
GO:0001055 RNA polymerase II activity molecular_function

KEGG:

id description
K03013 RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328150 lncRNA upstream 1379 1518990 ~ 1524862 (+) True G289329
TU328228 lncRNA upstream 9636 1516324 ~ 1516605 (+) True G289397
TU328217 lncRNA upstream 10294 1491929 ~ 1493098 (+) True G289388
TU328225 lncRNA upstream 19640 1504165 ~ 1505369 (+) True G289394
TU328220 lncRNA upstream 22338 1494413 ~ 1503903 (+) True G289390
TU328229 lncRNA downstream 697 1530353 ~ 1530598 (+) True G289398
TU328236 lncRNA downstream 14007 1543663 ~ 1545087 (+) True G289401
TU328237 lncRNA downstream 15827 1545483 ~ 1547588 (+) True G289402
TU328233 lncRNA downstream 31635 1561291 ~ 1567304 (+) True G289400
CI01000075_01506719_01516006.mRNA mRNA upstream 10188 1506210 ~ 1516053 (+) False CI01000075_01506719_01516006
CI01000075_01466937_01467865.mRNA mRNA upstream 58180 1466937 ~ 1468061 (+) True CI01000075_01466937_01467865
CI01000075_01451280_01460210.mRNA mRNA upstream 64605 1451280 ~ 1461636 (+) True CI01000075_01451280_01460210
CI01000075_01404076_01444348.mRNA mRNA upstream 81831 1404076 ~ 1444410 (+) False CI01000075_01404076_01444348
CI01000075_01364135_01365758.mRNA mRNA upstream 160398 1364135 ~ 1365843 (+) False CI01000075_01364135_01365758
CI01000075_01609077_01609286.mRNA mRNA downstream 79421 1609077 ~ 1610221 (+) True CI01000075_01609077_01609286
TU328149 other upstream 109151 1384043 ~ 1397668 (+) True G289328
TU328138 other upstream 160551 1328786 ~ 1363443 (+) True G289317
TU328137 other upstream 160551 1353492 ~ 1363443 (+) False G289317
TU328135 other upstream 160551 1362339 ~ 1363443 (+) True G289317
TU327647 other upstream 603825 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328140 other downstream 70525 1600181 ~ 1605306 (+) True G289319

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031671 True 1135 mRNA 0.39 7 NC_007113.7 56657804 ~ 56671326 (+)
bowfin (Amia calva) AMCG00005967 True 1111 mRNA 0.48 7 CM030142.1 13022361 ~ 13025617 (-)