Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU328217 |
| length | 521 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G289388 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000075 |
| NCBI id | null |
| chromosome length | 1642109 |
| location | 1491929 ~ 1493098 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU328161 | lncRNA | upstream | 25538 | 1465437 ~ 1466391 (+) | True | G289340 |
| TU328208 | lncRNA | upstream | 44672 | 1447045 ~ 1447257 (+) | True | G289379 |
| TU328207 | lncRNA | upstream | 46061 | 1445490 ~ 1445868 (+) | True | G289378 |
| TU328206 | lncRNA | upstream | 46619 | 1445106 ~ 1445310 (+) | True | G289377 |
| TU328196 | lncRNA | upstream | 122388 | 1369117 ~ 1369541 (+) | True | G289367 |
| TU328228 | lncRNA | downstream | 377 | 1516324 ~ 1516605 (+) | True | G289397 |
| TU328150 | lncRNA | downstream | 3043 | 1518990 ~ 1524862 (+) | True | G289329 |
| TU328229 | lncRNA | downstream | 14406 | 1530353 ~ 1530598 (+) | True | G289398 |
| TU328236 | lncRNA | downstream | 27716 | 1543663 ~ 1545087 (+) | True | G289401 |
| TU328237 | lncRNA | downstream | 29536 | 1545483 ~ 1547588 (+) | True | G289402 |
| CI01000075_01466937_01467865.mRNA | mRNA | upstream | 23868 | 1466937 ~ 1468061 (+) | True | CI01000075_01466937_01467865 |
| CI01000075_01451280_01460210.mRNA | mRNA | upstream | 30293 | 1451280 ~ 1461636 (+) | True | CI01000075_01451280_01460210 |
| CI01000075_01404076_01444348.mRNA | mRNA | upstream | 47519 | 1404076 ~ 1444410 (+) | False | CI01000075_01404076_01444348 |
| CI01000075_01364135_01365758.mRNA | mRNA | upstream | 126086 | 1364135 ~ 1365843 (+) | False | CI01000075_01364135_01365758 |
| CI01000075_01159479_01160597.mRNA | mRNA | upstream | 331266 | 1159479 ~ 1160663 (+) | True | CI01000075_01159479_01160597 |
| CI01000075_01526289_01529484.mRNA | mRNA | downstream | 10294 | 1526241 ~ 1529656 (+) | True | CI01000075_01526289_01529484 |
| CI01000075_01609077_01609286.mRNA | mRNA | downstream | 93130 | 1609077 ~ 1610221 (+) | True | CI01000075_01609077_01609286 |
| TU328149 | other | upstream | 74839 | 1384043 ~ 1397668 (+) | True | G289328 |
| TU328138 | other | upstream | 126239 | 1328786 ~ 1363443 (+) | True | G289317 |
| TU328137 | other | upstream | 126239 | 1353492 ~ 1363443 (+) | False | G289317 |
| TU328135 | other | upstream | 126239 | 1362339 ~ 1363443 (+) | True | G289317 |
| TU327647 | other | upstream | 569513 | 917914 ~ 922416 (+) | True | CI01000075_00917306_00921588 |
| TU328140 | other | downstream | 84234 | 1600181 ~ 1605306 (+) | True | G289319 |
