RNA id: CI01000075_01364135_01365758.mRNA



Basic Information


Item Value
RNA id CI01000075_01364135_01365758.mRNA
length 862
RNA type mRNA
GC content 0.55
exon number 2
gene id CI01000075_01364135_01365758
representative False

Chromosome Information


Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1364122 ~ 1365843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGGACGTTATGTCGAGCCCATCGAAGACGTGCCATGCGGTAACATCGTGGGTCTGGTTGGCGTAGACCAGTTCTTGGTGAAGACCGGGACCATCACGACCTTCGAGCAGGCCCACAACATGCGTGTGATGAAGTTCAGCGTCAGCCCTGTGGTCAGAGTGGCAGTGGAGGCCAAGAATCCTGCTGACCTGCCCAAACTAGTGGAGGGACTCAAACGCCTGGCCAAGTCCGACCCCATGGTGCAGTGTATCATTGAGGAGTCTGGAGAGCACATCATCGCTGGCGCTGGAGAACTTCACCTGGAAATCTGCCTTAAAGATCTGGAGGAGGACCATGCGTGCATTCCACTTAAGAAATCAGACCCTGTTGTGTCATACAGGGAGACGGTCAGTGCAGAATCAGACCAGATGTGTTTGTCCAAATCCCCCAACAAGCACAACCGTCTGTACATGAAGGCCAGGCCGTTCCCCGACGGTCTCGCTGAAGACATCGACAAGGGCGAGGTGACGTCCCGTCAGGAGCTCAAGGCCCGCGCCCGTTACTTGGCCGACAAATACGAGTGGGAGGTCACAGAGGCCCGTAAGATCTGGTGCTTCGGACCTGACGGAACCGGACCCAACGTCCTGGTGGACGTGACCAAGGGAGTGCAGTACCTGAACGAGATCAAGGACAGCGTCGTGGCTGGATTCCAGTGGGCCACTAAAGAGGTGAGAGATGTTCAGAATGAAGTGAGGTTTGGTTTGAATGGTCCTGTTGATGTCCTGGCTGGTCTATGAGGAGAAATCATGCACCACTCTGATGAAGTGATGGATAACCCCTACCACAAACATCTGAGACCTCCACAGACATGAACACATTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU328155 lncRNA upstream 47090 1295309 ~ 1317045 (+) True G289334
TU328160 lncRNA upstream 50327 1311275 ~ 1313808 (+) True G289339
TU328172 lncRNA upstream 92089 1271786 ~ 1272046 (+) True G289351
TU328124 lncRNA upstream 96576 1218359 ~ 1267559 (+) False G289309
TU328127 lncRNA upstream 96576 1230489 ~ 1267559 (+) True G289309
TU328196 lncRNA downstream 3274 1369117 ~ 1369541 (+) True G289367
TU328206 lncRNA downstream 79263 1445106 ~ 1445310 (+) True G289377
TU328207 lncRNA downstream 79647 1445490 ~ 1445868 (+) True G289378
TU328208 lncRNA downstream 81202 1447045 ~ 1447257 (+) True G289379
TU328161 lncRNA downstream 99594 1465437 ~ 1466391 (+) True G289340
CI01000075_01159479_01160597.mRNA mRNA upstream 203472 1159479 ~ 1160663 (+) True CI01000075_01159479_01160597
CI01000075_01033320_01042574.mRNA mRNA upstream 320440 1033220 ~ 1043695 (+) True CI01000075_01033320_01042574
CI01000075_01015651_01022674.mRNA mRNA upstream 341322 1015651 ~ 1022813 (+) True CI01000075_01015651_01022674
CI01000075_00917306_00921588.mRNA mRNA upstream 442415 917306 ~ 921720 (+) False CI01000075_00917306_00921588
CI01000075_00877796_00880322.mRNA mRNA upstream 483691 877796 ~ 880444 (+) True CI01000075_00877796_00880322
CI01000075_01404076_01444348.mRNA mRNA downstream 38233 1404076 ~ 1444410 (+) False CI01000075_01404076_01444348
CI01000075_01451280_01460210.mRNA mRNA downstream 85437 1451280 ~ 1461636 (+) True CI01000075_01451280_01460210
CI01000075_01466937_01467865.mRNA mRNA downstream 101094 1466937 ~ 1468061 (+) True CI01000075_01466937_01467865
CI01000075_01506719_01516006.mRNA mRNA downstream 140367 1506210 ~ 1516053 (+) False CI01000075_01506719_01516006
CI01000075_01526289_01529484.mRNA mRNA downstream 160398 1526241 ~ 1529656 (+) True CI01000075_01526289_01529484
TU327648 other upstream 441719 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other upstream 441719 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU327465 other upstream 1056214 305108 ~ 307921 (+) False G288755
TU327394 other upstream 1126864 235398 ~ 237271 (+) True G288708
TU328149 other downstream 18200 1384043 ~ 1397668 (+) True G289328
TU328140 other downstream 234338 1600181 ~ 1605306 (+) True G289319

Expression Profile