Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU328160 |
| length | 2360 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G289339 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000075 |
| NCBI id | null |
| chromosome length | 1642109 |
| location | 1311275 ~ 1313808 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU328172 | lncRNA | upstream | 39229 | 1271786 ~ 1272046 (+) | True | G289351 |
| TU328124 | lncRNA | upstream | 43716 | 1218359 ~ 1267559 (+) | False | G289309 |
| TU328127 | lncRNA | upstream | 43716 | 1230489 ~ 1267559 (+) | True | G289309 |
| TU328094 | lncRNA | upstream | 118301 | 1190796 ~ 1192974 (+) | True | G289280 |
| TU328196 | lncRNA | downstream | 55309 | 1369117 ~ 1369541 (+) | True | G289367 |
| TU328206 | lncRNA | downstream | 131298 | 1445106 ~ 1445310 (+) | True | G289377 |
| TU328207 | lncRNA | downstream | 131682 | 1445490 ~ 1445868 (+) | True | G289378 |
| TU328208 | lncRNA | downstream | 133237 | 1447045 ~ 1447257 (+) | True | G289379 |
| TU328161 | lncRNA | downstream | 151629 | 1465437 ~ 1466391 (+) | True | G289340 |
| CI01000075_01159479_01160597.mRNA | mRNA | upstream | 150612 | 1159479 ~ 1160663 (+) | True | CI01000075_01159479_01160597 |
| CI01000075_01033320_01042574.mRNA | mRNA | upstream | 267580 | 1033220 ~ 1043695 (+) | True | CI01000075_01033320_01042574 |
| CI01000075_01015651_01022674.mRNA | mRNA | upstream | 288462 | 1015651 ~ 1022813 (+) | True | CI01000075_01015651_01022674 |
| CI01000075_00917306_00921588.mRNA | mRNA | upstream | 389555 | 917306 ~ 921720 (+) | False | CI01000075_00917306_00921588 |
| CI01000075_00877796_00880322.mRNA | mRNA | upstream | 430831 | 877796 ~ 880444 (+) | True | CI01000075_00877796_00880322 |
| CI01000075_01364135_01365758.mRNA | mRNA | downstream | 50327 | 1364135 ~ 1365843 (+) | False | CI01000075_01364135_01365758 |
| CI01000075_01404076_01444348.mRNA | mRNA | downstream | 90268 | 1404076 ~ 1444410 (+) | False | CI01000075_01404076_01444348 |
| CI01000075_01451280_01460210.mRNA | mRNA | downstream | 137472 | 1451280 ~ 1461636 (+) | True | CI01000075_01451280_01460210 |
| CI01000075_01466937_01467865.mRNA | mRNA | downstream | 153129 | 1466937 ~ 1468061 (+) | True | CI01000075_01466937_01467865 |
| CI01000075_01506719_01516006.mRNA | mRNA | downstream | 192402 | 1506210 ~ 1516053 (+) | False | CI01000075_01506719_01516006 |
| TU327648 | other | upstream | 388859 | 917501 ~ 922416 (+) | False | CI01000075_00917306_00921588 |
| TU327647 | other | upstream | 388859 | 917914 ~ 922416 (+) | True | CI01000075_00917306_00921588 |
| TU327465 | other | upstream | 1003354 | 305108 ~ 307921 (+) | False | G288755 |
| TU327394 | other | upstream | 1074004 | 235398 ~ 237271 (+) | True | G288708 |
| TU328138 | other | downstream | 14978 | 1328786 ~ 1363443 (+) | True | G289317 |
| TU328137 | other | downstream | 39684 | 1353492 ~ 1363443 (+) | False | G289317 |
| TU328135 | other | downstream | 48531 | 1362339 ~ 1363443 (+) | True | G289317 |
| TU328149 | other | downstream | 70235 | 1384043 ~ 1397668 (+) | True | G289328 |
| TU328140 | other | downstream | 286373 | 1600181 ~ 1605306 (+) | True | G289319 |
