RNA id: TU328208


Basic Information

Item Value
RNA id TU328208
length 213
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G289379
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1447045 ~ 1447257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGCATTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCGTAAAATGACGGCATGTCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328207 lncRNA upstream 1177 1445490 ~ 1445868 (+) True G289378
TU328206 lncRNA upstream 1735 1445106 ~ 1445310 (+) True G289377
TU328196 lncRNA upstream 77504 1369117 ~ 1369541 (+) True G289367
TU328155 lncRNA upstream 130000 1295309 ~ 1317045 (+) True G289334
TU328160 lncRNA upstream 133237 1311275 ~ 1313808 (+) True G289339
TU328161 lncRNA downstream 18180 1465437 ~ 1466391 (+) True G289340
TU328217 lncRNA downstream 44672 1491929 ~ 1493098 (+) True G289388
TU328220 lncRNA downstream 47156 1494413 ~ 1503903 (+) True G289390
TU328225 lncRNA downstream 56908 1504165 ~ 1505369 (+) True G289394
TU328228 lncRNA downstream 69067 1516324 ~ 1516605 (+) True G289397
CI01000075_01404076_01444348.mRNA mRNA upstream 2635 1404076 ~ 1444410 (+) False CI01000075_01404076_01444348
CI01000075_01364135_01365758.mRNA mRNA upstream 81202 1364135 ~ 1365843 (+) False CI01000075_01364135_01365758
CI01000075_01159479_01160597.mRNA mRNA upstream 286382 1159479 ~ 1160663 (+) True CI01000075_01159479_01160597
CI01000075_01033320_01042574.mRNA mRNA upstream 403350 1033220 ~ 1043695 (+) True CI01000075_01033320_01042574
CI01000075_01015651_01022674.mRNA mRNA upstream 424232 1015651 ~ 1022813 (+) True CI01000075_01015651_01022674
CI01000075_01451280_01460210.mRNA mRNA downstream 4023 1451280 ~ 1461636 (+) True CI01000075_01451280_01460210
CI01000075_01466937_01467865.mRNA mRNA downstream 19680 1466937 ~ 1468061 (+) True CI01000075_01466937_01467865
CI01000075_01506719_01516006.mRNA mRNA downstream 58953 1506210 ~ 1516053 (+) False CI01000075_01506719_01516006
CI01000075_01526289_01529484.mRNA mRNA downstream 78984 1526241 ~ 1529656 (+) True CI01000075_01526289_01529484
CI01000075_01609077_01609286.mRNA mRNA downstream 161820 1609077 ~ 1610221 (+) True CI01000075_01609077_01609286
TU328149 other upstream 29955 1384043 ~ 1397668 (+) True G289328
TU328138 other upstream 81355 1328786 ~ 1363443 (+) True G289317
TU328137 other upstream 81355 1353492 ~ 1363443 (+) False G289317
TU328135 other upstream 81355 1362339 ~ 1363443 (+) True G289317
TU327647 other upstream 524629 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328140 other downstream 152924 1600181 ~ 1605306 (+) True G289319

Expression Profile