RNA id: TU328094


Basic Information

Item Value
RNA id TU328094
length 616
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G289280
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1190069 ~ 1199582 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGGTATCGGTGCATCCCTAGTCGCAACTCACATGTAAACCTTGAATGATCTAAACGGCACCTAGTAAAAACAACTTGATAAATATGCAACGGATACATGGTGGTGTTTGTGACCTGGTCCATCTCGTCCTGAGATGTTTTGAGCAGTTTGAGGATGCTGTCTAGCTTGGCTTTTCCAGCACGCAGACTCTCTTCCAGACGCTGCTCCTCTTGTTCAAGACAGTACAGGTCCGTCTTCGTTCTGCTCATCTCCTTCTCCTGCGTCTGCATGTCTGACTCCTGAGACACGATCTGAGTCTGCAGCGATGTGATCTTAGTGTTCTCCTCCTGCCATTTGTTCTTGATCTCGTCCAGCGTTGTTTCCAGCTTGGCTCTCTGTTGCTCCATCTCACTGAGTCGATCCTGAGCGCCCCGTTTCTGGTGCTCCAACTCCTGAAGACCGACATTTTCACGCTCCAGGTCTCTCTGCACCTCCTGCACAGAACCATTATTTTATCCACCTTATTATTAACGTAAGAGCTATTTGTAACCTGAATGTACGAGGCTTAGGTTGTCTTTCACTTACAGTTATTTTAGCTGTATAAAAACATATTGTAAAGTGGTATTTGTTATCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328112 lncRNA upstream 26257 1164313 ~ 1164539 (+) True G289297
TU328111 lncRNA upstream 26750 1163746 ~ 1164046 (+) True G289296
TU328110 lncRNA upstream 27869 1162695 ~ 1162927 (+) True G289295
TU328105 lncRNA upstream 49399 1140848 ~ 1141397 (+) True G289290
TU328098 lncRNA upstream 83429 1107164 ~ 1107367 (+) True G289283
TU328124 lncRNA downstream 25385 1218359 ~ 1267559 (+) False G289309
TU328127 lncRNA downstream 37515 1230489 ~ 1267559 (+) True G289309
TU328172 lncRNA downstream 78812 1271786 ~ 1272046 (+) True G289351
TU328155 lncRNA downstream 102335 1295309 ~ 1317045 (+) True G289334
TU328160 lncRNA downstream 118301 1311275 ~ 1313808 (+) True G289339
CI01000075_01159479_01160597.mRNA mRNA upstream 30133 1159479 ~ 1160663 (+) True CI01000075_01159479_01160597
CI01000075_01033320_01042574.mRNA mRNA upstream 147101 1033220 ~ 1043695 (+) True CI01000075_01033320_01042574
CI01000075_01015651_01022674.mRNA mRNA upstream 167983 1015651 ~ 1022813 (+) True CI01000075_01015651_01022674
CI01000075_00917306_00921588.mRNA mRNA upstream 269076 917306 ~ 921720 (+) False CI01000075_00917306_00921588
CI01000075_00877796_00880322.mRNA mRNA upstream 310352 877796 ~ 880444 (+) True CI01000075_00877796_00880322
CI01000075_01364135_01365758.mRNA mRNA downstream 171161 1364135 ~ 1365843 (+) False CI01000075_01364135_01365758
CI01000075_01404076_01444348.mRNA mRNA downstream 211102 1404076 ~ 1444410 (+) False CI01000075_01404076_01444348
CI01000075_01451280_01460210.mRNA mRNA downstream 258306 1451280 ~ 1461636 (+) True CI01000075_01451280_01460210
CI01000075_01466937_01467865.mRNA mRNA downstream 273963 1466937 ~ 1468061 (+) True CI01000075_01466937_01467865
CI01000075_01506719_01516006.mRNA mRNA downstream 313236 1506210 ~ 1516053 (+) False CI01000075_01506719_01516006
TU327648 other upstream 268380 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other upstream 268380 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU327465 other upstream 882875 305108 ~ 307921 (+) False G288755
TU327394 other upstream 953525 235398 ~ 237271 (+) True G288708
TU328138 other downstream 135812 1328786 ~ 1363443 (+) True G289317
TU328137 other downstream 160518 1353492 ~ 1363443 (+) False G289317
TU328135 other downstream 169365 1362339 ~ 1363443 (+) True G289317
TU328149 other downstream 191069 1384043 ~ 1397668 (+) True G289328
TU328140 other downstream 407207 1600181 ~ 1605306 (+) True G289319

Expression Profile