RNA id: TU328105


Basic Information

Item Value
RNA id TU328105
length 550
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G289290
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1140848 ~ 1141397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACAATGTTCCTCAACGTCAAATTGCAAAGGCTTTGCAAATCGCATCATCTACAGTGCATAACATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTACATAAGGGACGAGGCCGAAGACCTTTATTGGATGCCCGTGGTCTTCGGGCCCTCAGACGACACTGCATCACTCATTGGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTCCAGAAACCACTGTCGGTAAACACAATCCACCGTGCCATCTGCAGATGCCAACTAAAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGAAGCGCCGTCGTGTCCTGTGGGCCAAGGCTCATGTAAAATGGACTGTTTCAAAGTGGAAAAGTGTTCTATGGTCAGACGAGTCCAAATTTGACATTCTTGTTGGAAATCACGGACGCCGTGTCCTCTGGGCTAAAGAGGAGGGAGACCTTTCAGCGTGTTATCAGGGTTCAGTTCAAAAGCCAACATCTCTGATGGTATGGGGATGCATAAGTGCATACGGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328098 lncRNA upstream 33481 1107164 ~ 1107367 (+) True G289283
TU328088 lncRNA upstream 40717 1099847 ~ 1100131 (+) True G289278
TU328085 lncRNA upstream 61063 1079492 ~ 1079785 (+) True G289275
TU328082 lncRNA upstream 66754 1073890 ~ 1074094 (+) True G289272
TU327750 lncRNA upstream 131080 1009550 ~ 1009768 (+) True G288994
TU328110 lncRNA downstream 21298 1162695 ~ 1162927 (+) True G289295
TU328111 lncRNA downstream 22349 1163746 ~ 1164046 (+) True G289296
TU328112 lncRNA downstream 22916 1164313 ~ 1164539 (+) True G289297
TU328095 lncRNA downstream 48672 1190069 ~ 1191111 (+) False G289280
TU328093 lncRNA downstream 49399 1190796 ~ 1199582 (+) False G289280
CI01000075_01033320_01042574.mRNA mRNA upstream 97153 1033220 ~ 1043695 (+) True CI01000075_01033320_01042574
CI01000075_01015651_01022674.mRNA mRNA upstream 118035 1015651 ~ 1022813 (+) True CI01000075_01015651_01022674
CI01000075_00917306_00921588.mRNA mRNA upstream 219128 917306 ~ 921720 (+) False CI01000075_00917306_00921588
CI01000075_00877796_00880322.mRNA mRNA upstream 260404 877796 ~ 880444 (+) True CI01000075_00877796_00880322
CI01000075_00864628_00867240.mRNA mRNA upstream 272771 864029 ~ 868077 (+) True CI01000075_00864628_00867240
CI01000075_01159479_01160597.mRNA mRNA downstream 18082 1159479 ~ 1160663 (+) True CI01000075_01159479_01160597
CI01000075_01364135_01365758.mRNA mRNA downstream 222738 1364135 ~ 1365843 (+) False CI01000075_01364135_01365758
CI01000075_01404076_01444348.mRNA mRNA downstream 262679 1404076 ~ 1444410 (+) False CI01000075_01404076_01444348
CI01000075_01451280_01460210.mRNA mRNA downstream 309883 1451280 ~ 1461636 (+) True CI01000075_01451280_01460210
CI01000075_01466937_01467865.mRNA mRNA downstream 325540 1466937 ~ 1468061 (+) True CI01000075_01466937_01467865
TU327648 other upstream 218432 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other upstream 218432 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU327465 other upstream 832927 305108 ~ 307921 (+) False G288755
TU327394 other upstream 903577 235398 ~ 237271 (+) True G288708
TU328138 other downstream 187389 1328786 ~ 1363443 (+) True G289317
TU328137 other downstream 212095 1353492 ~ 1363443 (+) False G289317
TU328135 other downstream 220942 1362339 ~ 1363443 (+) True G289317
TU328149 other downstream 242646 1384043 ~ 1397668 (+) True G289328
TU328140 other downstream 458784 1600181 ~ 1605306 (+) True G289319

Expression Profile