RNA id: CI01000075_00864628_00867240.mRNA



Basic Information


Item Value
RNA id CI01000075_00864628_00867240.mRNA
length 2099
RNA type mRNA
GC content 0.38
exon number 3
gene id CI01000075_00864628_00867240
representative True

Chromosome Information


Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 864029 ~ 868077 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAAAATCCTATTAATATAGTCCAGGGCTCAACAATAAGGATTTTATTTCTGGCCAGTAAACCATAAATTCAAAAACACACTTTTCCTTATAAACAATGATTATATGATGCAAAACATTACTGATTTGTAGTGGTTTGTAGTTTAACACATTCTTAATGATGCTTTCAAGTCATTATTAACTGCTTCTATGTAAGCCAGCTAGATTAACAACATTATCTTGGTGACAAATCAGCAGAATTGGCAACAACAATGTAGAATACACCACAAAAAACAAATGTTTGAGTTTGCAAGGTATAAAAATGGGTGTACAAAATCAATGAATATAAAATTTTCAGCAGAAATGCAGAACTGACTCGAAACACTTTTAACAGCCTTCAGCCTTGTTTTCATTTGTGTCAAATTAAATATGCTTTCCGTCCTCAATAAGGTCTATATTCTTACTGTATTCCGAGAACTGTTTCATTTGTGCATCCGTTCACTTCTAAGGAATTTCACTAAAAACATCTAAGACAAAGTTGATACTTAAAGCAAACATTACTAAGGTCTGAAACACACTATGCAAGCACAAGAAAGCAGATGTCTCCGACTAACACAATGCAAGTACATGTTGCCACAAGAATCACTATAGCGGGAAACTTCTACGTTTCGTACCTCTTCCAAAGCTTCACCGAGGGCGAGCTGAAGAAGGTGATCGCGACTCTGGTGGAACGAAAGGAAAGGAGGATCAGAAACGAGGCAGGGCGGAGAACCAAACGAGCACGGAAGGGTCCAAAGCCTTGTTCTCTACAAAAGATCGAGCTCACGGTGAGCGAGCTTGGGCTCGGGTACGAAAGCGATGAGACACTGCTCTTCAGGTACTGCAGTGGGAATTGCATCCATGAACGACGCAACTATGACTTTGTAATGGAGCACAGGCAGTTGAATAACGGCTCCAATAACTGTGGAAACTTCAGGGAGTATGTCTTCACCATAGGAATACCAGAGAATGTTTCAGAATTCCATGGAAACTATAGGAGCTTTGGAAAGGGCAACCGTGTGACACAAAGAACTATTCGAGAACGCAGGGCATATTGCAATTTTGAAAAATATGCTAAGAGGGTTCCGGTACGCCACCATGGAAAGAATGAAAGCCACCAGAAATTGATACACAAAACACAAAAGACAAGGCCTGAATTGTCTAAAGCCAACTCTGGAAAGTTTGTCACAGAAAAAAGATTTGTTTCTGCCTTTTCAGTGGTTACTGGCACTTTTGATTAGTGCATGGCACTGGACTTTGACCAAAGGTGGATCGTCAGTTTAATCGATGGGACCGAAAGCTGGCGGGAGACTCGTTTTGCCTTCCACTGGAAACTTCTGCAGAAGAACAAGTAGTATTTATCTGAAGATATGTAAGTGGTAGAGGGCTACAGCGACGACTGTATGCTGCTCGCTTTTGTTACAAATCTGAATACTGAAGTATGAAGTGCAACACAGCTGTGAAAACTACCTCATTTCTTTCTTTGTTTCTTTTTTGTTTGTTTTCTTAGAAGAATGTACATGCAATGAATCTTGCTCTACCGCACCCACTTCCAGGGATTACATTAGTCAGAAATATGAATCAGAGGTATATACATGTAGAGAAATGCTTCTCTACCAAAAGTCTCCAAGGATGGATATTACCTAAAACAACATTGTCACTTGAAATGTATATGCACACTATATCAAGCCCTTAAATTTGACCTTAAAGCCTTGCCAAAGCATGTCTGATCAAATCCCATGTTCTCTCGTCTTTGAGACAATTTATACCCAAATATTTAGATTTAAAATAAGAATAGGCTACCCAATTCCAAAAGCCAATAGGGAAAAGTACAGCTTCAAATGTTTTCCCAAAGGTGTCGCCCCTCAAAGACCTTAAAAGTTCATTTTTCTCATGAACATGTTCATGTTTACATTCTTTTAGACAATAATCAAATCAAGATGCATTGTCTTTTGGAAAGTAATTCCAGATTTAGACCTTTTCAACAGCAAAACCTATACATTTACTATCCTTGAACACATTTATGGACAAGTAATTGTAACCTTTATTTATACAGATGGAACATTTTGCTCTTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU327662 lncRNA upstream 8486 855527 ~ 855543 (+) True G288915
TU327663 lncRNA upstream 8541 855441 ~ 855488 (+) True G288915
TU327667 lncRNA upstream 37340 788771 ~ 826689 (+) True G288918
TU327645 lncRNA upstream 137214 726571 ~ 726815 (+) True G288905
TU327615 lncRNA upstream 177059 685589 ~ 686970 (+) True G288877
TU327697 lncRNA downstream 4321 872398 ~ 872855 (+) True G288948
TU327705 lncRNA downstream 45568 913645 ~ 913925 (+) True G288956
TU327664 lncRNA downstream 72673 940750 ~ 941054 (+) False G288916
TU327665 lncRNA downstream 72673 940750 ~ 941014 (+) True G288916
TU327658 lncRNA downstream 120058 988135 ~ 992947 (+) True G288912
CI01000075_00821649_00821906.mRNA mRNA upstream 41958 821649 ~ 822071 (+) False CI01000075_00821649_00821906
CI01000075_00800884_00806063.mRNA mRNA upstream 57555 800780 ~ 806474 (+) True CI01000075_00800884_00806063
CI01000075_00682733_00683937.mRNA mRNA upstream 179457 682483 ~ 684572 (+) False CI01000075_00682733_00683937
CI01000075_00656048_00662437.mRNA mRNA upstream 200278 656009 ~ 663751 (+) True CI01000075_00656048_00662437
CI01000075_00548373_00566336.mRNA mRNA upstream 297546 548373 ~ 566483 (+) True CI01000075_00548373_00566336
CI01000075_00877796_00880322.mRNA mRNA downstream 9719 877796 ~ 880444 (+) True CI01000075_00877796_00880322
CI01000075_00917306_00921588.mRNA mRNA downstream 49229 917306 ~ 921720 (+) False CI01000075_00917306_00921588
CI01000075_01015651_01022674.mRNA mRNA downstream 147574 1015651 ~ 1022813 (+) True CI01000075_01015651_01022674
CI01000075_01033320_01042574.mRNA mRNA downstream 165143 1033220 ~ 1043695 (+) True CI01000075_01033320_01042574
CI01000075_01159479_01160597.mRNA mRNA downstream 291402 1159479 ~ 1160663 (+) True CI01000075_01159479_01160597
TU327465 other upstream 556108 305108 ~ 307921 (+) False G288755
TU327394 other upstream 626758 235398 ~ 237271 (+) True G288708
TU327648 other downstream 49424 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other downstream 49837 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU328138 other downstream 460709 1328786 ~ 1363443 (+) True G289317
TU328137 other downstream 485415 1353492 ~ 1363443 (+) False G289317
TU328135 other downstream 494262 1362339 ~ 1363443 (+) True G289317

Expression Profile