RNA id: TU327664


Basic Information

Item Value
RNA id TU327664
length 305
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G288916
representative False

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 940750 ~ 941054 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGGATATGTGGTTCTCCACGTCGTCGCTTCCAGCTTGTCTGAGACTGGCACTAAGTTGGATATAGAGTCCCATACAATGTAAACTCCTCAGAATCACTCCAAACGCGCCCATCACTGCTCCCTGTAAAACACTCTCTCACATCAGGTGAAAATATACGGCTTTGAGAGATAGATCCAGGTGTGGTGAGTGTTTACTGGTGGTTTTTGTCCCTGATGACAGCGGCAGGAGAGACAGAGAGGAGGCTGCGTGTGTTTGCAGTCGCCCACTGATGCGATTTGATTCTCCGCGAAGAGAAACTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327705 lncRNA upstream 26825 913645 ~ 913925 (+) True G288956
TU327697 lncRNA upstream 67895 872398 ~ 872855 (+) True G288948
TU327662 lncRNA upstream 85207 855527 ~ 855543 (+) True G288915
TU327663 lncRNA upstream 85262 855441 ~ 855488 (+) True G288915
TU327667 lncRNA upstream 114061 788771 ~ 826689 (+) True G288918
TU327658 lncRNA downstream 47081 988135 ~ 992947 (+) True G288912
TU327750 lncRNA downstream 68496 1009550 ~ 1009768 (+) True G288994
TU328082 lncRNA downstream 132836 1073890 ~ 1074094 (+) True G289272
TU328085 lncRNA downstream 138438 1079492 ~ 1079785 (+) True G289275
TU328088 lncRNA downstream 158793 1099847 ~ 1100131 (+) True G289278
CI01000075_00917306_00921588.mRNA mRNA upstream 19030 917306 ~ 921720 (+) False CI01000075_00917306_00921588
CI01000075_00877796_00880322.mRNA mRNA upstream 60306 877796 ~ 880444 (+) True CI01000075_00877796_00880322
CI01000075_00864628_00867240.mRNA mRNA upstream 72673 864029 ~ 868077 (+) True CI01000075_00864628_00867240
CI01000075_00821649_00821906.mRNA mRNA upstream 118679 821649 ~ 822071 (+) False CI01000075_00821649_00821906
CI01000075_00800884_00806063.mRNA mRNA upstream 134276 800780 ~ 806474 (+) True CI01000075_00800884_00806063
CI01000075_01015651_01022674.mRNA mRNA downstream 74597 1015651 ~ 1022813 (+) True CI01000075_01015651_01022674
CI01000075_01033320_01042574.mRNA mRNA downstream 92166 1033220 ~ 1043695 (+) True CI01000075_01033320_01042574
CI01000075_01159479_01160597.mRNA mRNA downstream 218425 1159479 ~ 1160663 (+) True CI01000075_01159479_01160597
CI01000075_01364135_01365758.mRNA mRNA downstream 423081 1364135 ~ 1365843 (+) False CI01000075_01364135_01365758
CI01000075_01404076_01444348.mRNA mRNA downstream 463022 1404076 ~ 1444410 (+) False CI01000075_01404076_01444348
TU327648 other upstream 18334 917501 ~ 922416 (+) False CI01000075_00917306_00921588
TU327647 other upstream 18334 917914 ~ 922416 (+) True CI01000075_00917306_00921588
TU327465 other upstream 632829 305108 ~ 307921 (+) False G288755
TU327394 other upstream 703479 235398 ~ 237271 (+) True G288708
TU328138 other downstream 387732 1328786 ~ 1363443 (+) True G289317
TU328137 other downstream 412438 1353492 ~ 1363443 (+) False G289317
TU328135 other downstream 421285 1362339 ~ 1363443 (+) True G289317
TU328149 other downstream 442989 1384043 ~ 1397668 (+) True G289328
TU328140 other downstream 659127 1600181 ~ 1605306 (+) True G289319

Expression Profile