G289280


Basic Information

Item Value
gene id G289280
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1190069 ~ 1199582 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU328095
CGTTGAGAGCTTTGCTGTAGCGCTCGATTGTCTTATTAAGTTCCCGCTGGGTGTCCTGTATCTCGCTGAGCTCACTGCGTGTCTGGTCCATCTCGTCCTGAGATGTTTTGAGCAGTTTGAGGATGCTGTCTAGCTTGGCTTTTCCAGCACGCAGACTCTCTTCCAGACGCTGCTCCTCTTGTTCAAGACAGTACAGGTCCGTCTTCGTTCTGCTCATCTCCTTCTCCTGCGTCTGCATGTCTGACTCCTGAGACACGATCTGAGTCTGCAGCGATGTGATCTA
>TU328093
AATGGTATCGGTGCATCCCTAGTCGCAACTCACATGTAAACCTTGAATGATCTAAACGGCACCTAGTAAAAACAACTTGATAAATATGCAACGGATACATGGTGGTGTTTGTGACCTGGTCCATCTCGTCCTGAGATGTTTTGAGCAGTTTGAGGATGCTGTCTAGCTTGGCTTTTCCAGCACGCAGACTCTCTTCCAGACGCTGCTCCTCTTGTTCAAGACAGTACAGGTCCGTCTTCGTTCTGCTCATCTCCTTCTCCTGCGTCTGCATGTCTGACTCCTGAGACACGATCTGAGTCTGCAGCGATGTGATCTAGTGTTCTCCTCCTGCCATTTGTTCTTGATCTCGTCCAGCGTTGTTTCCAGCTTGGCTCTCTGTTGCTCCATCTCACTGAGTCGATCCTGAGCGCCCCGTTTCTGGTGCTCCAACTCCTGAAGACCGACATTTTCACGCTCCAGGTCTCTCTGCACCTCCTGGACTTCACTGTTCTTCTGTCGCAGGACTTCTTCTTTCTGTCTGATTTCTGTCTCTAATAAGCGTTTTTCACTCTGCAGCTGGGAGATTTCCTGGTTGATGTCATCAAGATCCTTGCTTCCCGTCAGCTCAACCAACCCAACAGAACTGCTGCTGTCCCTGCCCAGACTGGTCAACGGGGTCAATTCAGACATGACTGACGGTGTGAATCCAGAGAGGATAGGTGTGCTGGCGACCCCTCTCTCTGACGGTGGTATCATGTCAGGGGTCAGACTCTGAGGAGGGTCCACTCCTTTAACTTTCTCCTGAATCAGGTGCATCGCCAGACAGAACTGCTCTTTGGTGAGTTTGCCGGTACGTTGAGTGTCCGCCAGTGACCATATGTGTGCCAGGACGCTCTGAGGCAGCCGAGAGTTCATGAAGATATCCTTCACCTCACCTCCTCCAACCATCCCATCAAAATCAGAGTCTGCCAGATCAAAGATCTCCTCGTACTGCTCTCTGTCATCCGCTGGCACCACCCAGTGATCTGAGGATTTGAGGCTGCGGTGGTGTCGGGGTGGAGCGCTTAAATGAGCTTGATGGAGACAGATTTGTGCTGCTGCCCAGAGGACTCTTGGAAAGCGACGGCACGGGACGCAGGTTCTCCATCAGGAGGAATGGACTAGAGGGAAGAACAGGAACTGATCCCGGGAGAGCGCCTGGAATCTTCTTACGTTTGGATGGAGGGATGAGAGTTGTAGGGAGGGTGGATGGCATAGGCTCCTTCTCTCTGGCTGCATAAACCAG
>TU328094
AATGGTATCGGTGCATCCCTAGTCGCAACTCACATGTAAACCTTGAATGATCTAAACGGCACCTAGTAAAAACAACTTGATAAATATGCAACGGATACATGGTGGTGTTTGTGACCTGGTCCATCTCGTCCTGAGATGTTTTGAGCAGTTTGAGGATGCTGTCTAGCTTGGCTTTTCCAGCACGCAGACTCTCTTCCAGACGCTGCTCCTCTTGTTCAAGACAGTACAGGTCCGTCTTCGTTCTGCTCATCTCCTTCTCCTGCGTCTGCATGTCTGACTCCTGAGACACGATCTGAGTCTGCAGCGATGTGATCTTAGTGTTCTCCTCCTGCCATTTGTTCTTGATCTCGTCCAGCGTTGTTTCCAGCTTGGCTCTCTGTTGCTCCATCTCACTGAGTCGATCCTGAGCGCCCCGTTTCTGGTGCTCCAACTCCTGAAGACCGACATTTTCACGCTCCAGGTCTCTCTGCACCTCCTGCACAGAACCATTATTTTATCCACCTTATTATTAACGTAAGAGCTATTTGTAACCTGAATGTACGAGGCTTAGGTTGTCTTTCACTTACAGTTATTTTAGCTGTATAAAAACATATTGTAAAGTGGTATTTGTTATCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU328095 False 283 lncRNA 0.52 2 1190069 1191111
TU328093 False 1264 lncRNA 0.52 8 1190796 1199582
TU328094 True 616 lncRNA 0.46 2 1190796 1192974

Neighbor

gene id symbol gene type direction distance location
CI01000075_01159479_01160597 KLF2B coding upstream 29406 1159479 ~ 1160663 (+)
CI01000075_01033320_01042574 AP1M1.S, AP1M1 coding upstream 146374 1033220 ~ 1043695 (+)
CI01000075_01015651_01022674 NA coding upstream 167256 1015651 ~ 1022813 (+)
CI01000075_00917306_00921588 NA coding upstream 268349 917306 ~ 922416 (+)
CI01000075_00877796_00880322 NA coding upstream 309625 877796 ~ 880444 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 coding downstream 164553 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A coding downstream 204494 1404076 ~ 1444410 (+)
CI01000075_01451280_01460210 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding downstream 251698 1451280 ~ 1461636 (+)
CI01000075_01466937_01467865 NA coding downstream 267355 1466937 ~ 1468061 (+)
CI01000075_01506719_01516006 NA coding downstream 306628 1505543 ~ 1516053 (+)
G289297 NA non-coding upstream 25530 1164313 ~ 1164539 (+)
G289296 NA non-coding upstream 26023 1163746 ~ 1164046 (+)
G289295 NA non-coding upstream 27142 1162695 ~ 1162927 (+)
G289290 NA non-coding upstream 48672 1140848 ~ 1141397 (+)
G289283 NA non-coding upstream 82702 1107164 ~ 1107367 (+)
G289309 NA non-coding downstream 18777 1218359 ~ 1267559 (+)
G289351 NA non-coding downstream 72204 1271786 ~ 1272046 (+)
G289334 NA non-coding downstream 95727 1295309 ~ 1317045 (+)
G289339 NA non-coding downstream 111693 1311275 ~ 1313808 (+)
G289367 NA non-coding downstream 169535 1369117 ~ 1369541 (+)
G288755 NA other upstream 882148 305108 ~ 316301 (+)
G288708 NA other upstream 952798 235398 ~ 237271 (+)
G289319 NA other downstream 400599 1600181 ~ 1605306 (+)

Expression


Co-expression Network