XLOC_010700 (BX005256.1)


Basic Information

Item Value
gene id XLOC_010700
gene name BX005256.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24705852 ~ 24708587 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020944
GTTAGTGAAGCAATGGCACTTCTCATTTCTCTCTTCCTCACCTGCCTTTTTTTCTCTAAAGCACAGACACTGATGTGTTATGCATGTGATGGAGGACAACCATGTCAATATAACATTGCATGTTCATCTTGTGGCTCTGTTACCACAACCGCATACTTGAATGGCAAAATTGTGAGCAGTTTCAGTAAGCTGAATTGTGTGACTCCTTCGTGTGTTTCTGGAAGCATAAACGCTGGACAAAGCAAAGTGACCATTAATTCCCAGTGCTGTAATAATACAAATTACTGCAGCACTCAGCCTCTGCCAGACTTGCCAAAAACGAGTCCTAACGGATATCAATGCTTCACCTGCGATATGACAGACTGCTCAAAAACACTGGCCTGTGAGGGCGACGAGACTCAGTGCTTTACTACAACAGTTTATGCTAATAGTGGGAAGGTGCCGATGAAGGGATGTTCAAGCAAGCAGCTCTGTGGCATCAACGGGACACAGACTCTTGGTTTACCTGCTCCTCTGGGTGCTGCTGTTACCAAATGTTGTCAGGGAAACTTGTGTAACCAAGCTCAAAGTCTGAGAGCTTATTTCCCCATTCTGATAGCACTTCTCTCTCTGTTTTTGTTCTGATGTGTTCTGCCTTCCACTAATTTTGAAGCACATctaaccaaataataataataataataatgaaaatgtcaTTTGTTCTCAGAGTAAACTGAAAAGGAAAATTAATTTtcactgaaaataataaatataaaaaaacttaatttttttttcttgacttgTGCAATCCATCtcctattttttatgtttaagaagagagagaaagaaaaagagagagagagagagagagagagagagagagaaagagagagagagagattaaatgGAATGGATTGaatgggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagata
>TCONS_00022166
AGTTAGTGAAGCAATGGCACTTCTCATTTCTCTCTTCCTCACCTGCCTTTTTTTCTCTAAAGCACAGACACTGATGTGTTATGCATGTGATGGAGGACAACCATGTCAATATAACATTGCATGTTCATCTTGTGGCTCTGTTACCACAACCGCATACTTGAATGGCAAAATTGTGAGCAGTTTCAGTAAGCTGAATTGTGTGACTCCTTCGTGTGTTTCTGGAAGCATAAACGCTGGACAAAGCAAAGTGACCATTAATTCCCAGTGCTGTAATAATACAAATTACTGCAGCACTCAGCCTCTGCCAGTAAAGAATATTGACAGGAAAATTTTGAAGCAGAGAGAagggaaggatcagcataggacctgGAGGCAGGAATCGAACTCGAGTCACCGTGAGcactggagtgcatgtgtcgatgtACTTTGCACTATATGTAATTGGCACCGACTGCTTAGCTTTTTACTGCGTTCGTTatgtgttgttttgaaaaatggtgtgTTGTTGGACTGGAATGTGATGCTTATTGTCTAATAATTTGTTGTACCATGGTGATAAATTCCCAACACAGGGATTAATAAAAGTTTCATGTGAACTttcataatcatattttaattttgggCACTTTTTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000106112

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020944 False 965 mRNA 0.39 5 24705852 24708586
TCONS_00022166 True 632 lncRNA 0.40 4 24706769 24708587

Neighbor

gene id symbol gene type direction distance location
XLOC_010699 negaly6 coding downstream 1997 24698849 ~ 24703855 (-)
XLOC_010698 pon2 coding downstream 32933 24669883 ~ 24672919 (-)
XLOC_010697 pon3.2 coding downstream 37232 24662252 ~ 24668620 (-)
XLOC_010696 pon3.2 coding downstream 44326 24656958 ~ 24661526 (-)
XLOC_010695 pon1 coding downstream 49587 24646600 ~ 24656265 (-)
XLOC_010701 kcnn4 coding upstream 35284 24743871 ~ 24832038 (-)
XLOC_010702 has1 coding upstream 231790 24940377 ~ 24945337 (-)
XLOC_010703 BX539313.3 coding upstream 291092 24999679 ~ 25012398 (-)
XLOC_010704 NA coding upstream 359917 25068504 ~ 25072892 (-)
XLOC_010705 prss1 coding upstream 372177 25080764 ~ 25085327 (-)
XLOC_010626 CR392024.2 misc downstream 3810677 20895112 ~ 20895175 (-)
XLOC_010690 CR854851.1 non-coding downstream 311389 24394346 ~ 24394463 (-)
XLOC_010686 NA non-coding downstream 710523 23984776 ~ 23995329 (-)
XLOC_010683 NA non-coding downstream 986279 23716831 ~ 23719573 (-)
XLOC_010682 CR533578.2 non-coding downstream 1113253 23592464 ~ 23592599 (-)
XLOC_010681 CR533578.4 non-coding downstream 1182477 23523261 ~ 23523375 (-)
XLOC_010708 NA non-coding upstream 529663 25238250 ~ 25241068 (-)
XLOC_010710 BX571853.2 non-coding upstream 619944 25328531 ~ 25328647 (-)
XLOC_010711 BX571853.1 non-coding upstream 631349 25339936 ~ 25342126 (-)

Expression


Co-expression Network