XLOC_010703 (BX539313.3)


Basic Information

Item Value
gene id XLOC_010703
gene name BX539313.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24999679 ~ 25012398 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020950
ACAAAATGGGCTGCACGCTCGCAACCTGGAGTCCGAGGACACAAACAAGACTTAGCAATCTGTGGAACAACAGGAGTTATCTTCCGAATTTgaattgttattaatatatagTGCATTATAGGCTACACTCCTATTATATTACCGATGGATCACGCGGTAAAACAAGTGTACGCATTTTCTCATGGGCTCACTCCCCTTTAGAACGGCTCGTACTTACCGTCGTGCTCGGCTTCCTGCTGTTGTCGTGGTCCTTTGAAAGACTACCTTCCCGTGGCACAATGCGCACGAACGCTATTTCCAAACTTTCAAAGCAGCATATGGAGATACTTAGAAAGCAATTCGTTGATTTAAAATAGATAATTAAGAGCTTGATGTTAGTACATCTCGAGGCACAAACACCAGACAATGTGGCTCAACCCGGGATGTTCCGTGACACTCCACCTCTTGAACCTATGAGAAGGCAGCGAACGGAGACGATGACCCGCCTCCAGTTCTACGGGGCCTCCATTTCAATCTCCAATGCGTGGAAGCATTTTTTGCGCATGGTTTCTAAGGAACGTAGCTTAAAATGGCTGCCGATGTCGTGGGAGGAGCTTGTTAGATCTTCTGTCGACCATCTTACGTGGTGCCTTTAGGACTGTTGCAGGGAGCTTGAACAGTTTCTTCTCAAAGAACCATAGCAAgcaaactggtgatcctcggcccatctttgctcccaaaggactagacctttcttggatgctttcattcattcctttttcagcttagtcacacagcagggttgccacagcagaatgaaccaacttatccagcacgttttacgcagcggatgcctttccaggtgcaacccatcactaggaaacacactcatatgctctcattcacacacatacactacggacaatttagcttacacaattcacctgtaccgcatgtctttggacttatgggggaaacaggagcacgcagaggaaacccacgcaaacatgcgaAGAACATGCCAAttccacacaaatgccaactgaccaagccgaggctttaaccagcaaccttcttgctatgaggcgacagcactacccactgcgccatcgcgtCATCCAAGTTGACttaacaaaacatgaaatattttgtgttcatattgtctg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0009451 RNA modification biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005634 nucleus cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098016

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020950 True 1145 lncRNA 0.46 2 24999679 25012398

Neighbor

gene id symbol gene type direction distance location
XLOC_010702 has1 coding downstream 54342 24940377 ~ 24945337 (-)
XLOC_010701 kcnn4 coding downstream 167641 24743871 ~ 24832038 (-)
XLOC_010700 BX005256.1 coding downstream 291092 24705852 ~ 24708587 (-)
XLOC_010699 negaly6 coding downstream 295824 24698849 ~ 24703855 (-)
XLOC_010698 pon2 coding downstream 326760 24669883 ~ 24672919 (-)
XLOC_010704 NA coding upstream 56106 25068504 ~ 25072892 (-)
XLOC_010705 prss1 coding upstream 68366 25080764 ~ 25085327 (-)
XLOC_010706 BX571853.3 coding upstream 162230 25174628 ~ 25206048 (-)
XLOC_010707 LRATD2 coding upstream 219565 25231963 ~ 25233515 (-)
XLOC_010708 NA coding upstream 225852 25238250 ~ 25241068 (-)
XLOC_010626 CR392024.2 misc downstream 4104504 20895112 ~ 20895175 (-)
XLOC_010690 CR854851.1 non-coding downstream 605216 24394346 ~ 24394463 (-)
XLOC_010686 NA non-coding downstream 1004350 23984776 ~ 23995329 (-)
XLOC_010683 NA non-coding downstream 1280106 23716831 ~ 23719573 (-)
XLOC_010682 CR533578.2 non-coding downstream 1407080 23592464 ~ 23592599 (-)
XLOC_010681 CR533578.4 non-coding downstream 1476304 23523261 ~ 23523375 (-)
XLOC_010710 BX571853.2 non-coding upstream 316133 25328531 ~ 25328647 (-)
XLOC_010711 BX571853.1 non-coding upstream 327538 25339936 ~ 25342126 (-)
XLOC_010732 NA non-coding upstream 1359299 26371697 ~ 26379456 (-)

Expression


Co-expression Network