G289427


Basic Information

Item Value
gene id G289427
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1492323 ~ 1515938 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU328267
GGCGCTCGAGCGAATCGGACTCACATGAGCACGAGCGTGTGATCGAGCGCTGTGCGGCAGCTGCCAGGAGCGCGCACAGACCCGTACACGCACCGCGGACCCAGATCATGACGCCCGCTCCGTTTTTTTCTCATTTCATTCGTTTTACCGTTTGATCCGGGTCTGATGGAGGGAGCTGCTGCGGCCGGAGGATGTTCCGCGCTGCCGGAGGACGCGGACGCGGTGGTCGGCGCGGGATACGGGATGGATGCTGCAGATCTCGACGCTGCTCTTAAGAAGACCCAGATAACCGAGATGCCGTCTTCCTCATGTCACCCCAGCTCTGGCCTCGAGAAGAAGATCGGTCACAGACGAGTCGATGCATCCGGCGAGACCACGTACAAGAAGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU328267 True 389 TUCP 0.61 3 1492323 1515938

Neighbor

gene id symbol gene type direction distance location
CI01000075_01478557_01486032 NA coding downstream 6291 1478557 ~ 1486032 (-)
CI01000075_01372627_01381776 BTBD2 coding downstream 108201 1371853 ~ 1384122 (-)
CI01000075_01358548_01364127 ARMC6 coding downstream 128196 1358548 ~ 1364488 (-)
CI01000075_01343318_01346352 SLC25A42 coding downstream 145971 1343291 ~ 1346425 (-)
CI01000075_01335455_01336921 SLC25A42.S, SLC25A42 coding downstream 154839 1334742 ~ 1337484 (-)
CI01000075_01518506_01519153 GPX4B, GPX4, GPX4A coding upstream 2192 1518130 ~ 1519153 (-)
CI01000075_01523380_01525836 GPX4 coding upstream 7281 1523219 ~ 1526110 (-)
CI01000075_01532241_01561644 NA coding upstream 15403 1531341 ~ 1561644 (-)
CI01000075_01574528_01598080 SBNO2, SBNO2A coding upstream 58590 1574528 ~ 1598080 (-)
CI01000075_01641424_01641717 NA coding upstream 125181 1641119 ~ 1641717 (-)
G289434 NA non-coding downstream 25839 1465436 ~ 1466484 (-)
G289450 NA non-coding downstream 39205 1452480 ~ 1453118 (-)
G289538 NA non-coding downstream 45065 1446922 ~ 1447258 (-)
G289536 NA non-coding downstream 47013 1445106 ~ 1445310 (-)
G289437 NA non-coding upstream 14386 1530324 ~ 1530598 (-)
G289447 NA non-coding upstream 31953 1547891 ~ 1565074 (-)
G289547 NA non-coding upstream 49409 1565347 ~ 1625941 (-)
G289167 NA other downstream 703924 770094 ~ 788399 (-)
CI01000075_00307523_00328194 NA other downstream 1164006 307523 ~ 331562 (-)
CI01000075_00275752_00278496 NA other downstream 1213783 275238 ~ 278542 (-)
G289036 NA other downstream 1377718 108703 ~ 114605 (-)
CI01000075_00022145_00044289 NA other downstream 1436559 20947 ~ 44289 (-)

Expression


Co-expression Network