XLOC_010824 (styk1b)


Basic Information

Item Value
gene id XLOC_010824
gene name styk1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31965340 ~ 31976269 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021180
GATGGCGGCCTCTTCCAGCGCTGCATCTTCTGAATGTGAGGCTGGAGATGCGCTGTGTGAAATTCGTGTGTATGAACAAGAGGTGATAATCGTACCGGTGATCTTCTTCATGATGTTCTTGATCACGCTGCTATTCATTATGCTGCTGAGGTTCTGTCCAGAGAAGGTGGAACGCCTGCAACCTGCTTCCAGTCGAGTATCCAGGACTAGGAGAAACTTGCAGGGCATTGATGCTCCTCTGGGTCTGAATGCTCTGGAAGGGGAGCCCATAGCACTGGACACAACCACTTACATGACATTCAACCCTGCAACGCCAGCCAGGCTCGATCACGCCAACAATGTTGCCTTTACTGATGGCATGTTTGGCGCCACAGCTTCAGCCTTTGCAAAGCCACGAGAACTTCCACGCCAGCGACTGCCGGAGAACTTTAACGGAGTCGCTCCTCTCCCAGCTTCATACTCACTGAAGTCAGACAGCCCCATCTCGCTCTATAGGGCTCGTATGGAAAACAGAAATGTGGTGCTTCGTGTGCTTAAAGATTCAGCCAGTAATCAGGAAAGTCAGTCATTCTTGGGATTTGCGGCCTTTCTGTCCCAGTTAGGGCCTCATCCCTTCTTACCAGAGCTGCTGGGAGTAATATCCTTGCGGGCTCCTCTCATTACTGTTATTGAGGAGATGGAGAACAGAGATCTGCTTGGATTCTTGTGGAGATGTAGACAGGATAATGTTGGACCAGATGGCATGTGTCAGATGACAGAGAAAAAAATCTTCAACATGGCTTCCCATGTGGCCTCAGCACTGGACTTTCTCCATGGCAAAGATCTTCACCACTGCAACTTAAAGGCTCGAAATGTGTTGGTCAGCAGGATTTGTACTGCAAAACTCTGGGGTTTAGACGACTTGTACGTGAGGACGTCAGGAAGTGGTAATTACAGTGAAGATCCTGGAAGAAAAAAGTGGCAAGCTCCTGAGCTACTGGCCAAGAGACCTTCTACTCCAAAAAGTGATATTTGGTCCTTTGGGCTGCTGCTGTATGAAATGGTGACACTTGGTGAAGTTCCTTTTGCCGAAATCCCTGTTAAAGAACTTCTACAGCATCATCAGAGGGTGAAACCAATAAGAAAACCAAACAACTGCTCAAACTCACTTTACTCAATTATCAAATCCTGCTGTCATTGGAAAGAGCAAGATCGGCCCTCATTGGCTGAAGTCAGGCGTAAACTCCAATCAGGAGAGAAGAGTGCCAGTGACAGCAGTGTTCTCCGTGTGCCCGAGCCAATCAATATTCAACAGTATCTGAAGGAGGCTGGATATGGAGAATCCAACAGCTACactgttttttaaaaaggataGCAGTCGTGAAGTAAAAGTTGTTGTGAGGCTGCTACatgatatatgaatatatgcTCTTGTTGAAATGTTCTGTTCACATTAATACACAATGTGTTTAATAGCTGACATTGTGTTGAAAAATTACATTGCAAGATGCTGTTCACAGAATCAGAGGGTTGCACCAAAACACATATTAAGCACCTCCTGATAAGTACACAGTCCTTGTATGAATTTGTTTAAAGCAAATGTTTGGTTAATGGCTCGTACGACTTTGTTTAAAATCTTTATGGAAAATGAATGGGAAAATACTTCTGGAACTTGCGCTGCTGAAAAACAGGATGGACGCTGTTTATGAAAACTCTCTTTTGTCCTTGTGGCTTTAAGCTGTGGATTTCCAGTGCCTTCTAAAGAGTCCTGACCAGccacatatatatttaaaaaaataacatatgaaatgcaaattttaaagtgtttacagATATTCTTTCTTTAAAATGCATTGAAATTGCAATGTTGCCAAATCCAgtgattttatttatatgatcaaatttttattgtaatgtaaaatttaacttaaaactttggaaaataaaagatttttgaaGTAAAATTGAGATCCATTTTTGACCATTTCAGCATTATTTGATAACACATGGCCGATATTTCTGGTTATatgaacaaaattaaataaaaaaattctgtttaaaCCTTGGATATTTTAAgcaaaatcacaaaaataaataaataacagggtccAATCATAGTTAAATAATTCAATTCTAGTTTTCTTACATTTAAGACATAATTGCTGTTGGGTAAGTTCCTTCAAAATGGTTAATGATTACTTATAacatcattaaaattgtatttaaattacattttaaattactttgtCAGAAAACTTAGTTACTCAacaagtaatttaattacttgactaaATACTAAAAATCCACATAAATCTCAATGCATAGACAGACACTAGAAATGAAACTTTTAATTACCTAAATTGGAGTCAAACAGGactgtttagttttgtttaaataaaaacttttcaagagttcacacttagctgatgactgattataaagtgtgtttggcgagagagagccctgagctcaaaagataaattcgttctggctattttccgaaaagagaagttgtaagattaccggtaatttgccggaatgctgcgctgtgtgaatgcagaggGAAGATTGCCGGatagagcgcgtgcacgtctagaacatgctgacgtgagacgtctactttagccaatcagaacagtcagaagcATTCACAtccggtttatgagaataaaagcctttgaatatcaAAATATTTGAGGAATTTCCCCCTCAGAAAGAGTTTGTGCCcccccccagtttttataaaggattgttcactcaaactgaaaattctttctgtcaatAATTATGAACACCCCCGTCGTTCCAACCTTCAgagcacacatttaaatatttaaaaatatatgaaatagcAATTGAATTATGAGAATGGCTATATCATGATGAACAGTgctttataataacaaaaataattccttacatttctatagcacttttcttggcactcaaagcgctttacacatagggggaatcttctcatctactttttctctttttttaatgcaagaaagaacattacaaagacataatatgaacaaagagacaaagagggttacataaatagatttccagcaaattaaacaagtttaaatgatttacaccaagaaagcgttttaaatgcagtgtaattGTTAGAGTCTTTTAAAGAGTTTACATAAATTTCAAAatcctttctgaaaataaaaaagtaagggtgtttccttgaaaatttacatttatggatgtaaaattttgttaaaaaaagcaataaatcaataatgaatttacaatgagaaggatctacactcagagagtaaccaaagaatacattttttggggaaatacagaagtttgaaaataagaattttttaatgaaattggaaaagtcaacccaaaacactttacagttcTCGCTATCCTGACAATTCTGACGGGCGAGTGCGAGTAAAAGGCaatttgtctcgttttacgcttgaacaactaaatgaatgccaaagtttatttaactgaatgtattttaattacattacaacacgaatgctgtaaaaggaaccgtatacaATGGAAAAAACGCACAATaaccggtcaccggaagtttataagtatatgggaacaacactagctcggcatatacttaattatattcatctgtctccacattctactgcatcccagaatattacacagcaccaaaaatgtaaaaaaaaatatacattgaatatatttaatatatttttgtgtacGGCAGACGGCAACTGGCCGTGACGCAGATTCCCGAGTCTATGTGCTCCAATCAGATGAGCCCTCTTAAGTGCTCGCCATGACAACGAGACagcagtgacgtgccttgtaaaaatttgcatctgcgctcctataaagctcgtgtgctctctaTCAGCGTTGTCAGTTTGCTCGGTGTagctgtttgtacttgaccaaggtgagttctataccgacggtacgagtggagccacgccaatctcacgaagtccgcttcgtgaagcttcactcgggcctgtctgtgctgtagttccttgtGGTTTGCGTACATAAACGTAACATCGCAAGgaatattacgtgtttgttgctcgaaatgtgccgccgagcaacatctattgaatactggcacggcctggcACCCGGTCTTCTCGTGCACTCCCTGGgacgaggcggcctttgagccctaggcaggggaAAAAACAACCCCCGAGGATcctcagggaaacacggggggccggtagtgggacctcgctgcgagggttatggtgggtgggagtagcgaggcccactcagcgtctattttaaactatagtttcaaactttagtttactatagctTGAAATAGacaccatggtaactgttatgatttaactttatgcaaagagcttagaatgaccaagagcaacagccccggattccgccattttgaagttaaagcgatcggccgtccattggatctcattgctgtcgcgatggaaagcagctgctttgtttttatttaatttattcaaaaagcgcgttattgtttcccaaattgtagagtgtcgcctcttggtgattctaggctctttgctctttttctgactgttgtaatgttttgctttgtgtttcaGCTAagctgttgagcaaagaaggactattgaagacaacagttgaagacaaccgcgggttatattcacgagtgCGCGCGTTATAATGTTTCCGGGTTGTTTTCTGAAAGTTTGTcttgtttgcatgtcaaactaaataaactatactctttctaaacacctgtctcgtgttttatttgtcctctacagcaatgcactgtcatgtaagtctgttgaatgcatttgtatgcaacatggtttgacaatacagtagtctaacaaataaatggttgttataaatgtaccttgattagtcaacatttggtgtaggtaataaaaagttaatcaaagatgtcctaagacataagggttatgttatggttgtttcataactatattattattctgtatgtttaaaaccagc
>TCONS_00021181
AGACTTGGTGTACCGTTCACCATAAGGAAATTTTATAGCAGCAAGGAAGGTGACTAACAGCGGGATATGTTTGTGCTGTGTTCATTAATGGGATATTATTGCCATCATGGAAAACTTTCTGAATAGAGACAAGGAAAAACTGAACAGCTAAGAACGTCTACAACTGCAGTGATCATCAGGATGGCGGCCTCTTCCAGCGCTGCATCTTCTGAATGTGAGGCTGGAGATGCGCTGTGTGAAATTCGTGTGTATGAACAAGAGGTGATAATCGTACCGGTGATCTTCTTCATGATGTTCTTGATCACGCTGCTATTCATTATGCTGCTGAGGTTCTGTCCAGAGAAGGTGGAACGCCTGCAACCTGCTTCCAGTCGAGTATCCAGGACTAGGAGAAACTTGCAGGGCATTGATGCTCCTCTGGGTCTGAATGCTCTGGAAGGGGAGCCCATAGCACTGGACACAACCACTTACATGACATTCAACCCTGCAACGCCAGCCAGGCTCGATCACGCCAACAATGTTGCCTTTACTGATGGCATGTTTGGCGCCACAGCTTCAGCCTTTGCAAAGCCACGAGAACTTCCACGCCAGCGACTGCCGGAGAACTTTAACGGAGTCGCTCCTCTCCCAGCTTCATACTCACTGAAGTCAGACAGCCCCATCTCGCTCTATAGGGCTCGTATGGAAAACAGAAATGTGGTGCTTCGTGTGCTTAAAGATTCAGCCAGTAATCAGGAAAGTCAGTCATTCTTGGGATTTGCGGCCTTTCTGTCCCAGTTAGGGCCTCATCCCTTCTTACCAGAGCTGCTGGGAGTAATATCCTTGCGGGCTCCTCTCATTACTGTTATTGAGGAGATGGAGAACAGAGATCTGCTTGGATTCTTGTGGAGATGTAGACAGGATAATGTTGGACCAGATGGCATGTGTCAGATGACAGAGAAAAAAATCTTCAACATGGCTTCCCATGTGGCCTCAGCACTGGACTTTCTCCATGGCAAAGATCTTCACCACTGCAACTTAAAGGCTCGAAATGTGTTGGTCAGCAGGATTTGTACTGCAAAACTCTGGGGTTTAGACGACTTGTACGTGAGGACGTCAGGAAGTGGTAATTACAGTGAAGATCCTGGAAGAAAAAAGTGGCAAGCTCCTGAGCTACTGGCCAAGAGACCTTCTACTCCAAAAAGTGATATTTGGTCCTTTGGGCTGCTGCTGTATGAAATGGTGACACTTGGTGAAGTTCCTTTTGCCGAAATCCCTGTTAAAGAACTTCTACAGCATCATCAGAGGGTGAAACCAATAAGAAAACCAAACAACTGCTCAAACTCACTTTACTCAATTATCAAATCCTGCTGTCATTGGAAAGAGCAAGATCGGCCCTCATTGGCTGAAGTCAGGCGTAAACTCCAATCAGGAGAGAAGAGTGCCAGTGACAGCAGTGTTCTCCGTGTGCCCGAGCCAATCAATATTCAACAGTATCTGAAGGAGGCTGGATATGGAGAATCCAACAGCTACactgttttttaaaaaggataGCAGTCGTGAAGTAAAAGTTGTTGTGAGGCTGCTACatgatatatgaatatatgcTCTTGTTGAAATGTTCTGTTCACATTAATACACAATGTGTTTAATAGCTGACATTGTGTTGAAAAATTACATTGCAAGATGCTGTTCACAGAATCAGAGGGTTGCACCAAAACACATATTAAGCACCTCCTGATAAGTACACAGTCCTTGTATGAATTTGTTTAAAGCAAATGTTTGGTTAATGGCTCGTACGACTTTGTTTAAAATCTTTATGGAAAATGAATGGGAAAATACTTCTGGAACTTGCGCTGCTGAAAAACAGGATGGACGCTGTTTATGAAAACTCTCTTTTGTCCTTGTGGCTTTAAGCTGTGGATTTCCAGTGCCTTCTAAAGAGTCCTGACCAGccacatatatatttaaaaaaataacatatgaaatgcaaattttaaagtgtttacagATATTCTTTCTTTAAAATGCATTGAAATTGCAATGTTGCCAAATCCAgtgattttatttatatgatcaaatttttattgtaatgtaaaatttaacttaaaactttggaaaataaaagatttttgaaG

Function

symbol description
styk1b Predicted to enable signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human STYK1 (serine/threonine/tyrosine kinase 1).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3435 Predicted to enable signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human STYK1 (serine/threonine/tyrosine kinase 1).

Ensembl:

ensembl_id ENSDARG00000041947

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021180 False 4971 mRNA 0.39 9 31965340 31974482
TCONS_00021181 True 2117 mRNA 0.43 10 31968373 31976269

Neighbor

gene id symbol gene type direction distance location
XLOC_010823 si:ch1073-90m23.1 coding downstream 31600 31924934 ~ 31933740 (-)
XLOC_010822 rbfox1l coding downstream 45772 31900127 ~ 31919568 (-)
XLOC_010821 NA coding downstream 73308 31882148 ~ 31892032 (-)
XLOC_010820 NA coding downstream 83717 31878685 ~ 31881623 (-)
XLOC_010819 cdc42l coding downstream 140815 31815244 ~ 31824525 (-)
XLOC_010825 CR854927.4 coding upstream 1424 31977693 ~ 31980948 (-)
XLOC_010826 gstk4 coding upstream 5814 31982083 ~ 32008281 (-)
XLOC_010827 gstk1 coding upstream 32934 32009203 ~ 32013929 (-)
XLOC_010828 CR854927.1 coding upstream 51810 32028079 ~ 32039063 (-)
XLOC_010829 NA coding upstream 67120 32043389 ~ 32049993 (-)
XLOC_010626 CR392024.2 misc downstream 11070165 20895112 ~ 20895175 (-)
XLOC_010817 NA non-coding downstream 204209 31760113 ~ 31761131 (-)
XLOC_010811 CR855311.4 non-coding downstream 314157 31646390 ~ 31651183 (-)
XLOC_010809 CR855311.1 non-coding downstream 336653 31623975 ~ 31628687 (-)
XLOC_010831 CR854927.2 non-coding upstream 175930 32152199 ~ 32163795 (-)
XLOC_010838 NA non-coding upstream 372504 32348773 ~ 32378676 (-)
XLOC_010839 NA non-coding upstream 411307 32387576 ~ 32389474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_09319234_09326444 STYK1 coding CI01000027 null 9318811 ~ 9326787 (-)