CI01000027_09319234_09326444 (STYK1)


Basic Information

Item Value
gene id CI01000027_09319234_09326444
gene name STYK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9318811 ~ 9326787 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09319234_09326444.mRNA
ATTAGATATGTGTATATTCACAGGGTTTGACAGCTGAAAATGATACACTGTTAAATGTATTAAGGGCTTGGTATATCCCCTTTGATGGGTAAATAATGTTTTTAGCAACCCTATACAGTAAAGGAGGGTGTTAACAACAACAGCAAATGACGGAGCACAGGTGAGGAGGGTGGAGCTAAGTAACCAACAAAGGTGTGACCTAGACAAACACAAGCAGACTTAAAGTACACCGTAAGGAAATTCTCTAGAAACAAGGAAGGGGATGAATAAGAGCGACCGATGACACTGCATAACATTGGGAATACAGTGGTGATGTATTCAACAATGGGATATGATTTTCATCATGGAAAACTATCTGAATAGAGACAATCTGAAACTGAATATTACGGAGATGGCGGCCACTTCCAGTTCTGCATATTCAGAATGTAAAACTGGAGATACATTTTGTGAGATCCGTGTGTATGAACAGGAAGTGATAATCGTACCAGTGCTGTTTTTGATGGCTTTCTTGGTCACGCTGGTGCTTCTGCTGCTGCTGAGGTTCTGTCCTGAGAAGGTAAATCGCCTGCAACCCGGCTCCTTTCGAGCAAACAGGACTAGGAGAAATTTGCAAGGCATTGATGCTCCTCTGGGTCTAAATGCTCTGGAAGGTGAGCCAATAGCACTGGACACTACATCTTACATGACGTTCAACCCTACATCACAAGTTCGAGACTCCTATAGGCATGACCATGCCTCATTAAATGCACACAATGTGGACTTTATCGATGGCGGAGGCTCTTTTGGGGCCGGAGCTTCAGCCTTCTCAAAGCCCAGGGAACTTCCACGTCAGCGACTGCCGGAGAACTTCAAAGGGGTGTCTCCTCTCCCAGCATCATACTCTCTGAACTCAGACAGCTCCGTCTCACTCTATAGGGCTCGTATGGAAAACAGAAATGTGGTGCTGCGTGTACTTAAAGATTCAGCCAGTAACAAGGAAAATCAGTCATTCTTGGGCTTTGCGGCCTTCCTTTCCCAGTTAGGGCCTCATCCCTTCTTACCGGAGCTTCTGGGAGTAATATCCCTGCGGGCCCCTCTCATTACTGTTATTGAAGAGATGGAGAACAGAGATCTGCTTGGATTCCTGTGGAGGTGTAGACAGGATAATGTTGGACCAGACGGCATGTATCAGATGACAGAGAAAAAGATCTTCACCATGGCCTCACATGTGTCCTCTGCACTGGACTTTCTCCATAGCAAAGATCTTCTCCATTGCAACATCAAGGCTCGTAGTGTATTGGTCAGCAGGATGTGCACCGCAAAACTCTGGGGTTTGGGTGATTTGTATGCGAGGACGTCAGAAAGTGCTAATCGCAGTGAAGATCCTGGAAGAAAAAAGTGGCAGGCTCCTGAGCTTTTGGCCAAGAGACCTGCCACTCCAAAAAGTGATGTTTGGTCATTTGGGCTGCTGCTGTATGAAATGGTGACTCTTGGTGAGGTCCCTTTTTCTGAAATCCCTGCAAAGGAACTTCTACAGTATCATCAAAGAGCCAAAACACTGAAGAAACCAAACAACTGCTCCAACTCACTTTACTCAATTATCAAAGCCTGCTGTCAGTGGAAGGAGCACGACCGCCCCTCATTGGCTGAAGTCAGGCATAAACTCCAATCTGGAGAGAAGAGTGCCAATGACAGCAGTATTCTCCGTGTGTCTGAGCCAATCAATATTGAACAGTATCTGAAGGAGGCGGGATATGGAGAATCCAACAACTACACAGTTTTCTGAACTCCAGATGGCTCTACGTACAAATACATCACATCTATATGAAGACCCTATTTTGTTTGTGGTGTACACTATACATCTCCAGTGATTCCTAAAGAGTGAATTGACTGTCGACCAGCCATACTAATGTTAGAAAGTACGAAATGTTAATTTTAAAGAATTCTTACAAATATAAGCCTACTTTCTTTAATGGTGCCAAATTCTCTGATTTTATTTGTTATCAAATGACTCTTTTATTGTACAGTAAGATATTTGAACCTGCTGATGGTATGGAAAGCTAGAATGTAAAACAATGAAGTGAGAATCAACATTATTTGACTGATCAAGCAAAATTGAGATCCACTTTTTTTTCAGGACAGTCCAGAGCCAGTTTATTGATGCAGCCTTGTTGCAGGTCCATTTGCACATTTACGCTATCAGAATAAA

Function

symbol description
styk1 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Located in plasma membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K17510 STYK1; tyrosine-protein kinase STYK1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09319234_09326444.mRNA True 2188 mRNA 0.44 10 9318811 9326787

Neighbor

gene id symbol gene type direction distance location
CI01000027_09305054_09305683 NA coding downstream 12931 9305054 ~ 9305880 (-)
CI01000027_09296745_09302793 NA coding downstream 15342 9296506 ~ 9303469 (-)
CI01000027_09281286_09288538 RBFOX1L coding downstream 30273 9281196 ~ 9288538 (-)
CI01000027_09252655_09272284 NA coding downstream 45149 9252394 ~ 9273662 (-)
CI01000027_09210702_09220403 CDC42.L, CDC42L, BRAFLDRAFT_122664, CDC42 coding downstream 98296 9209711 ~ 9220819 (-)
CI01000027_09332854_09337620 NA coding upstream 5947 9332734 ~ 9339176 (-)
CI01000027_09341489_09346178 NA coding upstream 14656 9341443 ~ 9346663 (-)
CI01000027_09401652_09408536 CNOT3, CNOT3A coding upstream 74601 9401388 ~ 9409001 (-)
CI01000027_09437673_09445306 IMA5, KPNA5 coding upstream 109456 9436243 ~ 9445548 (-)
CI01000027_09464510_09467490 RWDD1 coding upstream 137424 9464211 ~ 9467740 (-)
G143781 NA non-coding downstream 183794 9134810 ~ 9135017 (-)
G143749 NA non-coding downstream 383185 8930400 ~ 8935626 (-)
G143660 NA non-coding downstream 526099 8791989 ~ 8792712 (-)
G143814 NA non-coding upstream 96076 9422863 ~ 9423342 (-)
G143694 NA non-coding upstream 96624 9423411 ~ 9424624 (-)
G143817 NA non-coding upstream 127448 9454235 ~ 9454893 (-)
G143818 NA non-coding upstream 130439 9457226 ~ 9457539 (-)
G143820 NA non-coding upstream 151779 9478566 ~ 9478786 (-)
G143325 NA other downstream 1432762 7884535 ~ 7886049 (-)
G143267 NA other downstream 1645042 7669329 ~ 7673769 (-)
G142299 NA other downstream 1878620 7439178 ~ 7440191 (-)
G142209 NA other downstream 2160813 7153623 ~ 7157998 (-)
G142203 NA other downstream 2175748 7141094 ~ 7143063 (-)
G144365 NA other upstream 1211993 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010824 styk1b coding NC_007127.7 CM002900.2 31965340 ~ 31976269 (-)