CI01000027_09296745_09302793


Basic Information

Item Value
gene id CI01000027_09296745_09302793
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9296506 ~ 9303469 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09296745_09302793.mRNA
ACTGTACATTTTAATTTTATATGTAAATAAATTGTTAAAGATTCCAGTCAAACAAACCTTATTTGAGTGTCTGCCCCCTTCTCAACATCACATTTTCATTTCTCTATTTTCTCGTCGGTTAAGTCTCTTGACCCCTCTCTCTCTCTTACTCTTTTTCCTGCTCCCTCCCTCTCTCCCCTGCTGCCTTGCCTCCTCTCTCTAAGAGAGTTTGGTCAATAATTGATGAATCTTGCTTACTGAAAGGGTAACAGGTCTATAGCAATAGTCCATTGCCCATTCATGTATCTTTCCCTCCTCCCAGAGCAGGCTTTTTGAGAGGCTGTATAAACGCTACACAAACGCTTTTAAATGATTTCAGTGAGCAAATATTCACCATTGTATCTATTCAAAGCCTTTTAGTCAGTCTGTATATGTGCAGTAGTTCACCGACCTCTAATGTCAGTGGCAGGAGATGGGCATGCAAGAGTTATTCCTGTCAGTCAACAGGCAGCAGGAGACAAGGAAGGATGTAGGGAGAGATTAAATGAGAGAGTAGCAGGGGGCAGAGAGAAAAGAGAGAGAGAGCGATACACATGCACACACAGAGACGGAGAGAAGCAGTTAATTCCCTATCAGGAGTGATGGCCTGCATGCCTGGTTAGCATATTTCTGTGGCTGTCTGTAATAAACACGTACCATGGAAGGGAGAAACGAGAAGTTGTTCTCCAGAAAAAGAAGTTTCACATTCGGAGCTTATGGAGGGATTGACAAATTCATCACTGGAAATGAGAGCAGCTGTGCAGAATCCATGGGTCACAGCATACTGGATATTTTGGATTCCCCCTCCAGTGAGGCTAAGCCACTCACTTCTGCACCGTCCAGTCAGAAGGTTACTGAGTTGTTTGCAATCATTGAAAAGCTACAGGGTAGCAGATTGGATGAACAACGTTGTGAGTTTCCACCACCTCTGAGGACACGGCTGTTAAAGATTGGAGATGGCTTACCTCTCATCCTGCCCCCTAAATCTGGAGGTTATTGGATCGACCCTCCCCTGGATAGACACGTGGAGACCAGCCCTACTCTCTCACAGGGTGGATTTGGTCTGGAGAGCTATGACATCATGGAGAGAGACAGTGAAGCTAAAGTCTATCAGGAATTCTTCCGCCATAGAGCCCCAGAGATCATAATGGCATTTGATGAACACAGGGTGTCTCAAAACTTTAAATTTGGTGTCTTATACCAGAGAGAAGGACAGTTCACAGAGGAAGATATTCTCAGTAACAATGAGGAAAGTGAGGAGTTTTTGGAGTTTTTATCAATACTCGGGCAGACAGTCAAACTGCAAGGATTTACTGGGTTCAGGGGAGGTCTGGATGTCTCTCATGGCCAGACAGGAAATGAAGCAGTTTTCACCTCCTTCCATGGACGAGAGATTATGTTCCATGTTGCCACTAAACTGCCGTTCACAGAAGGAGATACACAACAGTTACAGAGAAAGAGACACATTGGGAATGATATTGTTGCCCTGGTATATCAGGAGGGTCACACTCCCTTCATTTCAGATGTGATCAGATCCCACTTCTTGCACTGTTTTATTGCAGTGCGGAGAATAAAGAGAGAAAATGAGGGAGAAGGAGAAGATGGAGGATCATTTCAGGTATCTGTCACTGCTAGGGAGGATGTGCCCCCATTTGGCCCACCCCTTCCTACGCCACCCATTTTTACCGAGGGCTCAGTTTTAAGAGAGTTCCTTTTGACCAAACTTATAAACGCTGAAATCTCTTGTTACAAGGCAGAGAAATTCAGTCGACTGGAGTTACGTACACGTTCATCTCTCTTGGAAGCACTGCGATCTGAACTGTCTTCCCGCTCCCAATGCATGTTGGGAGAGCCGTCATTGCCCGGCATCCCCCTCACTGAAGGAGGGAGGAGTGTTACAGAGGGTGGTGGAGGATTCATTGAGAACTTTAAGAGAGCTATTAGAGTGCGAAGCCACTCGTTCGATACCTTGGGAGTACCAAAGAAGGCAGGTGGTGTAGCAGGGCAGCGGCCAAAGCACAAAAAAGACTTCAAGACTTCTGAAGACCTCAAGATAGGTGCTTACCATCCGTTTAAAGAGTGCAAAGCACAATTAAGTAAATAGATCATTTTAATAATGCTTTGTGTATTAAGGTAAGTTGTGACTAGCTGCAAGTGCAATCATAAAGATATGAATATGTAAGATTTCAGATATTGTATATTATCATTTGAATGTCTTCTTTAAAGTGGCATAGTTAAGATTCAGTGGCTGCTTTTAACTGATGTACACCAGTGAAGATGGGTTTAATTTCTGGAAATGAACAAACTATTTTTCTGAAATTTATTCATCCAACTGTGATTAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030695 GTPase regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09296745_09302793.mRNA True 2361 mRNA 0.44 15 9296506 9303469

Neighbor

gene id symbol gene type direction distance location
CI01000027_09281286_09288538 RBFOX1L coding downstream 7968 9281196 ~ 9288538 (-)
CI01000027_09252655_09272284 NA coding downstream 22844 9252394 ~ 9273662 (-)
CI01000027_09210702_09220403 CDC42.L, CDC42L, BRAFLDRAFT_122664, CDC42 coding downstream 75991 9209711 ~ 9220819 (-)
CI01000027_09147371_09202288 CHD4 coding downstream 93748 9146980 ~ 9202758 (-)
CI01000027_09123917_09131231 NA coding downstream 165275 9123752 ~ 9131231 (-)
CI01000027_09305054_09305683 NA coding upstream 1585 9305054 ~ 9305880 (-)
CI01000027_09319234_09326444 STYK1 coding upstream 15342 9318811 ~ 9326787 (-)
CI01000027_09332854_09337620 NA coding upstream 29265 9332734 ~ 9339176 (-)
CI01000027_09341489_09346178 NA coding upstream 37974 9341443 ~ 9346663 (-)
CI01000027_09401652_09408536 CNOT3, CNOT3A coding upstream 97919 9401388 ~ 9409001 (-)
G143781 NA non-coding downstream 161489 9134810 ~ 9135017 (-)
G143749 NA non-coding downstream 360880 8930400 ~ 8935626 (-)
G143660 NA non-coding downstream 503794 8791989 ~ 8792712 (-)
G143814 NA non-coding upstream 119394 9422863 ~ 9423342 (-)
G143694 NA non-coding upstream 119942 9423411 ~ 9424624 (-)
G143817 NA non-coding upstream 150766 9454235 ~ 9454893 (-)
G143818 NA non-coding upstream 153757 9457226 ~ 9457539 (-)
G143820 NA non-coding upstream 175097 9478566 ~ 9478786 (-)
G143325 NA other downstream 1410457 7884535 ~ 7886049 (-)
G143267 NA other downstream 1622737 7669329 ~ 7673769 (-)
G142299 NA other downstream 1856315 7439178 ~ 7440191 (-)
G142209 NA other downstream 2138508 7153623 ~ 7157998 (-)
G142203 NA other downstream 2153443 7141094 ~ 7143063 (-)
G144365 NA other upstream 1235311 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010823 si:ch1073-90m23.1 coding NC_007127.7 CM002900.2 31924934 ~ 31933740 (-)