CI01000027_09123917_09131231


Basic Information

Item Value
gene id CI01000027_09123917_09131231
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9123752 ~ 9131231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09123917_09131231.mRNA
TGCCATTGACTGGATGGGTGCAGTCCCCTGGACACCCACGAGGGTATGACCCCGATTCCAGCCTGACTTGGAAAGAGTGTGCTCCAACCGGACACAGAATCACACTCACTCTCTTACATTTGGACCTGGAAGAAAGCTTTGATTGTGAGGATGATTCCTTGAAGATATTTGCTGATGAGGAGCTTCTTTTCAAACTGTGTGGACGCAAGTCCATGAAGGAGCTGCAGGCGTCTATCAACCCTTTCCTCCACTCCTCCCGTGGTGGTTGTCTCTCTGTTTCATTTCTTGCAGACTACTCGAACCCTAAGAGACACACTGGATTTCGAGGCTTTTATGCCATTCAGGATGTTGATGAGTGTACGGACCCTGAAAATGAGTGCACCCAACTCTGCAATAACTACATTGGAGGTTATCGCTGTTTCTGCAGACCAGGTTACGTCCTTGACCCTGATGAGCACACCTGCCAAGTTAGCTGCAGTGAAGATCGCAACGGCTCTCGAGAAGGTGTGCTGATGTCACCTGGCTGGCCCGAGCCGTACCCTGAAAACTCTGTGTGTTCTTACACTCTGGCTGTAGAAGAAGGTCTGCAGTTTGAGCTGACGTTCATGGGCGTGTTTGATGTGGAAATGAAAGAGAATGGACAGTGTATCGACTCGTTAACTATAAAACCTCTCTCTGGTGATGTTAGGACATTTTGCGGAAGGGATCTCCCTCCATTCTTCCTCACAAGGTCTCAACGTGTTGAGATTATCTTCAGGACAGACCACAAAGGAGCAAACCGAGGATTTAGCCTCAGTTACAGAGTGAGAGAGATGAATTGTGTTGGACCTGTGACGCCAACATCTAGTCTGATTTCACAGCATCCTTATTCCGAATATCCCACGGGCTACAAGGTTAAAGTGAAGTGTGACAAAGGACATGTATTAAAATCAAATGAATCAGCTGAGGTTGAGTATGAATCCACATGCCAGAAGAATGGAGAGTGGAGTCCTGTTATCCCCTGTGAACCTGTGAATTGTGGCATTCCAGAGCTTCCTGAATTAGTGGAGCTATCAGAAAACGATCTTCCAACAACTTATCTGAAACAAATCGGTTTCAAGTGTAAATCTCAGTATTATCAACTGGATAAAACTGGTAATTTTACCTGTAATGCTGAGGGTAAATGGGTATCGGAGAGTGGTCAAGAATTAACAGAAAATTTGCCTAAATGTGAACCAGTATGTGGCATGAATAAAGAGGACTCTTTTGGTGGCAGAATCTTTGGTGGGAAGAGAGCCATATTTGGCCAGATTCCCTGGCAGCTCTTACATAGGTTGAATCCCAGAGGTGGTGCGTCTCTGATCAGTGATTACTGGGCTCTAACAGCTGCTCATGTAGTAGATGGATATGAAGAAACCACCATGAATTGGCTAGGGGGAATCATTTTTGCTCAGGATGAAAACCCAATCAATATGGAGACAGAGAAGATCATAATTCACCCAAATTATATGAAAGTTGGTAAAGGTAATGGAGAACCAGCAAGCTTTGATAATGACATTGCACTCATCAAAATGTCTGCCAGGGTGCCTCTAGGTCCAAACATCAGGCCAGTGTGTCTGCCAAACAAAACACATGAACCTGTAGAGGAAGGTACAATCTCAGGTTTTGGAATAGCTAAAAAAGGACTGAGTAGAAATCTGCTTTATGGACCCGTCAATATATATTCACTTGATAAATGTTTTTCAAGAGATTTGCCTGTCACTCATAACATGATATGTGCTGGAGGAGACGAAGTAGACAGTTGTGCAGGTGACAGTGGAGGTCCTTTGTTTTCTCCTGTTCTGGGCTATGGGTCTCCAGACCAGCCTTATCGTCTTACAGGCATTGTATCATGGGGTCCTCCTGGATGTGGAAATAAAAGCTATAAGGGGTACTATACAAAAGTCCAGAATTACCTGGATTGGATCAAAGAAACCATGGAAAAAAACTAACATCAGAGCATTAAAATTATATTCACCTACACCAATCATTATTGTAATATACACGAAGGAATTTTCTCTTTGCTATATCTGATTGATGTATTTGCATCTGCTTTTCCATAAATAATTCAGCATTTTGAAATGGTTATATTAAGTTGTTTTATACTCCCCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09123917_09131231.mRNA True 2135 mRNA 0.43 10 9123752 9131231

Neighbor

gene id symbol gene type direction distance location
CI01000027_09103562_09122837 NA coding downstream 915 9103166 ~ 9122837 (-)
CI01000027_09095210_09102256 NA coding downstream 21417 9095150 ~ 9102335 (-)
CI01000027_09080885_09092608 NA coding downstream 30907 9080666 ~ 9092845 (-)
CI01000027_09068632_09069609 NA coding downstream 54121 9068065 ~ 9069631 (-)
CI01000027_09042551_09055596 PHF20L1 coding downstream 68035 9041603 ~ 9055717 (-)
CI01000027_09147371_09202288 CHD4 coding upstream 15749 9146980 ~ 9202758 (-)
CI01000027_09210702_09220403 CDC42.L, CDC42L, BRAFLDRAFT_122664, CDC42 coding upstream 78480 9209711 ~ 9220819 (-)
CI01000027_09252655_09272284 NA coding upstream 121163 9252394 ~ 9273662 (-)
CI01000027_09281286_09288538 RBFOX1L coding upstream 149965 9281196 ~ 9288538 (-)
CI01000027_09296745_09302793 NA coding upstream 165275 9296506 ~ 9303469 (-)
G143749 NA non-coding downstream 188126 8930400 ~ 8935626 (-)
G143660 NA non-coding downstream 331040 8791989 ~ 8792712 (-)
G143652 NA non-coding downstream 339121 8784411 ~ 8784631 (-)
G143636 NA non-coding downstream 359056 8764477 ~ 8764696 (-)
G143623 NA non-coding downstream 384682 8738847 ~ 8739070 (-)
G143781 NA non-coding upstream 3579 9134810 ~ 9135017 (-)
G143814 NA non-coding upstream 291632 9422863 ~ 9423342 (-)
G143694 NA non-coding upstream 292180 9423411 ~ 9424624 (-)
G143325 NA other downstream 1237703 7884535 ~ 7886049 (-)
G143267 NA other downstream 1449983 7669329 ~ 7673769 (-)
G142299 NA other downstream 1683561 7439178 ~ 7440191 (-)
G142209 NA other downstream 1965754 7153623 ~ 7157998 (-)
G142203 NA other downstream 1980689 7141094 ~ 7143063 (-)
G144365 NA other upstream 1407549 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010814 c1s coding NC_007127.7 CM002900.2 31676281 ~ 31686602 (-)