CI01000027_09401652_09408536 (CNOT3, CNOT3A)


Basic Information

Item Value
gene id CI01000027_09401652_09408536
gene name CNOT3, CNOT3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9401388 ~ 9409001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09401652_09408536.mRNA
AGTGCAGATGAGATATGGCGATTAAATGCTGCTGATCTAACACGTTAGCATCAGCGTGGCTAGTGCTCAGTGATCAGAGACTGCGTAAATCTGCGTAAACACTGGTTGTGTTGGCGTAACGGTATACGTGACCTAAACTATGGGAACGATCAATTAAAATTCTTCATATTTTCTCTTATTAAGGAGGATTGCAAAGTCGATAGTTGTGTTTATTTGTTGACCTGTAAAGAACTCGAGTAAAGCATAATTTTGAAGATATTAATCGTTTTCGGGACTTAGACGAATAGTGTAACGTCAATCGAGCAGGATGCGTTGATGTTATCTTTTTTTATTGAGATGAGATTTATCTGTCAGGAGCAGTAGAAACGCTTACCATCTGCTTCACACTGAATGCTGTGCAAGTTAACAGTCTCTCTGATGTGCTTGCAGTGACAGAAGGTATGAAGACAGTATCATAGCGAAGCCATGGCTGATAAGAGAAAACTTCAAGGTGAAATAGATCGATGTTTGAAAAAAGTTGCTGAAGGCGTCGAACAGTTTGAAGACATTTGGAAAAAGCTTCACAATGCAGCCAATGCCAACCAGAAGGAAAAATATGAGGCAGATCTCAAAAAAGAGATTAAAAAGCTTCAGCGGCTAAGAGATCAGATTAAGACATGGGTGGCATCCAATGAGATCAAAGACAAACGGCAGCTAGTGGAGAACCGCAAGCTTATTGAAACGCAAATGGAGCGCTTTAAGGTGGTTGAAAGAGAAACCAAGACAAAAGCCTATTCTAAAGAGGGGCTGGGCTTGGCTCAGAAAGTGGACCCAGCACAGAAAGAGAAGGAGGAAACGGAACAGTGGCTCACGAACACAATAGACACTTTGAACATGCAGGTGGACCAGTTTGAGAGTGAAGTTGAGTCCCTCTCTGTTCAAACACGAAAGAAGAAAGGAGACAAGGAGAAGCAGGATCGGATTGAGGAGCTAAAGAGGTTAATCGAGAGACACCGGTATCACATTCGTATGTTAGAGACCATCTTAAGGATGCTGGATAATGATTCGATCCAGGTTGAAGCTATCCATAAGATCAAAGATGATGTGGAATACTACATTGACTCTTCACAAGACCCAGATTTCGAAGAGAATGAGTTCCTCTATGATGATCTGGACTTGGAAGATATACCGGCAGCCTTGATGGCGACGTCACCTCAGGGCCACATTGAAGATGAAATGTTCCTTCAGTCCAGCAGCACACCGACCTCCACCACTTCCTCTTCCCCCATCCCTCCATCTCCTGCTACAGGCACAACGGAGATTTTGGAGGATAAGAGAGGTCGATCGACAGACAGTGAAGTCAGTCAGCAAGCACAGGTCAAACTCTCCTCGACATCCGTACCCTCCAACAACACACCTAGCCCACCTAGCCACCCCACGCTACCTGCCTCCACAACTACTTCTCTGCCCAGTTCCAGCACATCTGGCCCAGTTACTTCCAATTCCCAGTCCCAGGCTTCAACAGTACCTGGGGTCGAGGGCTCTAGACTGGGTTTGGGCCTGGGGAAAGGGGGTGTGACGGTCACCAGCAGCAGTAGTGTGGCTCAGATGCCAGGTCTGGGCATGGCAGGCATGTCTAGTTCTCTCAGCACCATGCCAGGTCTTCTCTCAGGCTCTACCCCTGCCCCCTATGCCCAGGCAGCTGCAGGTGGAACAGCAGGTAGTGCTTCCAGTGGTTCAGTGGGGAGCAGCAGTGGTAGTTCTGGCATATCTGTACCGAGCGGAGGTGCAGGGGCAGCAAGCACAGGCGCGACCAGTAACGGTACGGGTACAGGGGCAAGTATGGGCTTGCTAGGGTCCAGTCCAGGTCACGGGTCCCTAACTGGAGGGATTTTGAACCTGGTACCGGGGCAGACAGCTCTCCACGGGTCTGCGCAGGTACCTGTAAGCCCTGTGGGCACAACACCTGGAGGAGGAACTGGAGAGAGTGGATTGGGTGGGAATGGAAGCAGTTCTGTCTCGAGTGGAGGAGTTACAAACGTAGCGCCTGCAAGACCCCCCAGTGGCCTCAAACAAAACGGCGCAACCAGTTACAGTGCTGTGGTTGCAGACAACACACCAGACTCCTCACTCAGCAGTGCCAGCCAATCACAAAACAGCCATTCCTCGTCCTCAAGCTCATCAACCAATCAAACTCTGGATAATGGCCCCAGTTTATTGAGTTCTATCACTCTACCCCCCTCCTCCCCATCACCTGCTTTCAATGACAGCACACCTGGTGGTGGGAGTCTGCTAAACGGCCCACACTCCTACACACCAAACACAGAAGCCATCAAGGCTCCTGAGCCACCAAGCTCTCTAAAAGCTATGGCAGAGCGAGCTGCACTAGGATTGGCACTGGATGGAGAAATCCCACCCTTAGAGCTGTTCTCAACATCCTCAGCTCCACCTGGACCCACAACAGCCCCTCAGCCTGCTGTTTCAGAGGTCAACCTGCCGCCATCTTTAGGGGCATGTCCGCTAGGCCCCACCCCCCTCACTAAAGAGCAGCTTTACCAACAGGCAATGCAGGAGTCAGCATGGACACACATGCCTCACCCATCCGATTCAGAGAGAATCAGGCAGTACCTGATGAGAAATCCCTGCCCTACACCGCCATTCCACCACCAGGTGCCCCCACATCATTCGGACTCTATTGAGTTCTACCAGAGATTGTCCACTGAAACACTCTTCTTCATATTCTACTACCTGGAGGGCACAAAGGCACAGTACCTATCGGCTAAAGCACTGAAGAAGCAATCGTGGAGGTTCCACACCAAATACATGATGTGGTTCCAACGGCACGAGGAACCCAAGACCATCACTGATGAGTTTGAACAGGGCACGTACATTTACTTTGACTATGAAAAGTGGGGCCAGAGAAAAAAGGAAGGATTTACGTTTGAGTACAGATACCTGGAAGACCGAGACCTGCAGTGACTGACGGAGGAAGAGACGGGGAGAGAGAGAGAGAGAGAGAGATTGCTACGACAGAGATAACGCTGCTGTTGACATTCCGAGATGAACTCCATGTCGTGGTTAAAGTTGGATGTGAAGTTGGCCTTTTTCTTTAAAAGAGAGAGAGAGTAGGGGGTCGAGTGCCTGTTTACATGCAAACATTTGAACCTCCTTTAACTGAGTCTTTATCCCCTTCATTTCTGTTCTAACTGAAACCCCCCCACATAGTCAAGCGACAGAAATAAA

Function

symbol description
cnot3a Acts upstream of or within digestive tract development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Is expressed in several structures, including gut; head; heart; integument; and testis. Orthologous to human CNOT3 (CCR4-NOT transcription complex subunit 3).
cnot3 Involved in regulation of stem cell population maintenance. Part of CCR4-NOT complex.

GO:

id name namespace
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay biological_process

KEGG:

id description
K12580 CNOT3, NOT3; CCR4-NOT transcription complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09401652_09408536.mRNA True 3222 mRNA 0.49 17 9401388 9409001

Neighbor

gene id symbol gene type direction distance location
CI01000027_09341489_09346178 NA coding downstream 54725 9341443 ~ 9346663 (-)
CI01000027_09332854_09337620 NA coding downstream 62212 9332734 ~ 9339176 (-)
CI01000027_09319234_09326444 STYK1 coding downstream 74601 9318811 ~ 9326787 (-)
CI01000027_09305054_09305683 NA coding downstream 95508 9305054 ~ 9305880 (-)
CI01000027_09296745_09302793 NA coding downstream 97919 9296506 ~ 9303469 (-)
CI01000027_09437673_09445306 IMA5, KPNA5 coding upstream 27242 9436243 ~ 9445548 (-)
CI01000027_09464510_09467490 RWDD1 coding upstream 55210 9464211 ~ 9467740 (-)
CI01000027_09472471_09475553 NA coding upstream 63351 9472352 ~ 9476152 (-)
CI01000027_09476738_09478257 FAM26F coding upstream 67498 9476499 ~ 9478417 (-)
CI01000027_09504696_09522574 MMS22L coding upstream 95601 9504602 ~ 9522837 (-)
CI01000027_09252655_09272284 NA non-coding downstream 143507 9252394 ~ 9273662 (-)
CI01000027_09210702_09220403 CDC42.L, CDC42L, BRAFLDRAFT_122664, CDC42 non-coding downstream 176007 9209711 ~ 9220819 (-)
G143781 NA non-coding downstream 266371 9134810 ~ 9135017 (-)
G143749 NA non-coding downstream 465762 8930400 ~ 8935626 (-)
G143660 NA non-coding downstream 608676 8791989 ~ 8792712 (-)
G143814 NA non-coding upstream 13862 9422863 ~ 9423342 (-)
G143694 NA non-coding upstream 14410 9423411 ~ 9424624 (-)
G143817 NA non-coding upstream 45234 9454235 ~ 9454893 (-)
G143818 NA non-coding upstream 48225 9457226 ~ 9457539 (-)
G143820 NA non-coding upstream 69565 9478566 ~ 9478786 (-)
G143325 NA other downstream 1515339 7884535 ~ 7886049 (-)
G143267 NA other downstream 1727619 7669329 ~ 7673769 (-)
G142299 NA other downstream 1961197 7439178 ~ 7440191 (-)
G142209 NA other downstream 2243390 7153623 ~ 7157998 (-)
G142203 NA other downstream 2258325 7141094 ~ 7143063 (-)
G144365 NA other upstream 1129779 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location