CI01000086_02543856_02545475 (FZD1, FZD1.L)


Basic Information

Item Value
gene id CI01000086_02543856_02545475
gene name FZD1, FZD1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2542368 ~ 2545808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_02543856_02545475.mRNA
ACAGGCGAAAGAAATCCCGACGCTCCCTAACACGAGCCATCTGTCCGTAAACCCCGCCCGCGTTTCGCTTATGAACAGCAGACAGCGGGGCGCCTGGAAACAGGTTTGAACAGCTCACAGAAACTCTGACTCTACACAGCGCGACTCTTTATTCGTGTCAGGCATTTGTGTGGTTTTCTTTTCTTCGCTCGTTTCGTGATCCGCGGAGCAGCGTCTGGGGCGCCGCCGCACTTTCCTAAAAGTTTGACCGGAGTAAAAGCCCGTTTGACAGGATAAATCAACAAAGGGAGGAAGAGCGCTGGCGCAAAAGGAGACAAACCGCAGAAGGAAAGTATGGCCGCGCGCGATGCGTCCGCGCTCTTCCTGCTCGCCTTTGGAATACTGGGAGCGTGCGCGCAGTACGGAGACCGCGGCATGTCGGTTCCCGAGCACGGCTTTTGCCAGCCCATCTCCATCCCTCTGTGCACGGACATCGCGTACAACGAGACCATCATGCCCAACCTCCTCGGCCACACGAACCAGGAGGACGCGGGGCTGGAGGTGCACCAGTTCTACCCGCTCGTCAAAGTGCAATGCTCGCCGGACCTCAAGTTCTTTCTGTGCTCCATGTACGCGCCGGTGTGCACGGTGCTGGAGCAAGCGCTACCGCCGTGCCGCTCGCTGTGCGAGCGCGCACGTCAGGGCTGCGAGGCGCTCATGAACAAATTCGGCTTCCAGTGGCCAGAGAGTCTCGCGTGTGAATCGTTCCCGGTGCACGGCGGAGAGCTGTGTGTGGGTCAGAACACCTCGAGTGCGCCCGTCAACCCGACGCCTGATGTGACACAAGCGACACCCGACCACGTCCCAAAGGGGCGTTTTAAATGCCCAGCGTCGCTCAAAGTGCCGCCGTACCTCAACTACCGCTTTCTGGGCGAGGAGAACTGCGGCGCGCCGTGCGAACCCAAAAAGCTCCACGGGATGATGTACTTCAGCGAGGATGAGCAGAAGTTCGCAAGGATTTGGATAGGGATTTGGTCGGTTTTGTGCTGCGCGTCCACTTTGTTCACTGTCCTGACTTATTTGGTGGACATGAAGCGCTTTAGTTACCCGGAGAGACCCATCATATTCCTTTCCGGGTGTTACACGATGGTGTCCATCGCGTACATCGCCGGATTTCTGCTGGAAGACAAAGTGGTTTGCAACGAGCAGTTCGAGAATGAGTTCCGGACGGTGGTGCAGGGGACCAAAAAAGAAGGCTGCACCATTCTGTTCATGATGCTGTACTTCTTCAGCATGTCCAGCTCCATCTGGTGGGTCATTCTGGCGCTCACCTGGTTCCTCGCGGCAGGGATGAAATGGGGCCACGAGGCCATCGAAGCGAACTCGCAGTACTTCCACCTGGCGGCGTGGGCAGTTCCGGCCATCAAGACCATCACCATCCTGGCGGTGGGTCAAGTGGATGGAGATGTCCTGAGCGGCGTCTGCTTCGTGGGCATCAACAGCGTGGACGCTCTCCGCGGCTTCGTCCTCGCACCCCTCTTCGTCTACCTGTTCATCGGCACCTCGTTCCTCCTGGCGGGGTTCGTGTCTCTGTTCCGCATCAGGACTATCATGAAGCACGACGGCACCAAGACGGAGAAGCTGGAGAAGCTGATGGTGCGCATCGGCATCTTCAGCGTCCTGTACACGGTTCCGGCCACCATCGTGATCGCATGTTACTTCTACGAACAGGCCTTTCGCGCGCAGTGGGAACAAACCTGGAGCGCGCAGTCGTGCAAGACGTACGCGGTGCCGTGTCCCGCGCACAACCCGCAAATAAACCCGGATTTCACGGTGTTTATGATCAAGTACCTGATGACCCTGATTGTGGGAATCACATCTGGATTCTGGATATGGTCTGGAAAGACGCTGAATTCATGGAGAAAGTTCTACACGAGACTGGCAAACAGCAAACATGGAGAAACAACAGTGTGACAAACTGCTTTTTTTATCCTTCACTTTTTTCTGATGAAAAACCAACTGTTTAAAGAGATGTACATAAACATTGTGATTTTTTTTGTAAGTATATATTTGTATTTAAATCACACTTGGATGTTCTTTTTTTAATCAAAGGAACTTTTTTTTGGACAGACCGTATTGTTTTGGAGATTATTTATGCCTTTTCTCTTGGAATATTCTGGGTTGGGGATCTGTTTTTTAAGCCTGTATGTAAAACTGTGTCTTTTTTAATCGACATCAGTATTTCCACGGGCAAATATTCAAACTGCTTTTTACATGCAAATAATGCAGAAATAATACTAATGTGTGTGAATTGTGCACCCAGCACTTATGGCCGCATATCATGGACAGAATTGAGCTTTAAATTAAGGCTTTGTGACTGAGATTTGTCTGGGTGCAGATGAATTATAGTACTGGAATGTTTTATGGAGACTGAGAACAAAAACAGCAAGTGATCCGTGCTGGAAAAACTGATTAGTCCAGCATGAACTGGTTTGCTGGTCTCCCAATCTGGTCTGGCTCGGACAGCAGCAATCTCAGGCTGTTTTAAAATGTTTTTAAGATGTAAAGTTAAGTGCCTTTTTCATTTTGGAGCAGCATTGGGCCCAGGCCTGCACTTTTGTTTAACTCAAAGAAATGTATACATGTGTTTCTTCAGTCTGTAATGATATTTCTGAAGGTTTTTTGTTCTCCTATGGCTCTTTTGCACAGAAGTACCTCTAAACATACAGCTAGAACGGGATGGACGGTGTTTGCAATGCACTTCTCAAATAGTTTAATGTCTGTGTTGGTATCGTAACTAATCCATGAATATGATGTGAAAAATGGCATGCCAACTTTCTGGTGCATATGTGTAGGGATAAACCGATAAATCGGCCGATATTTGGCTCTTTTTTAAATGGTCAGCAGCGATAATCTGGTCCGCTCATCCTGTTTGTCATTTCTAAAATTTAACGACAGGCCTGCGGATGGATAAAGCAATTTGCTTTTCAGATTTTTGAGTAATTCTGCATTTGATTTCTGGTTATCGGTATCGACATCAGCCATTAAAAACCCCACGTCGATCAAGCACTACATAGTAATTCACATCAACTGTTCATAATTCTTCTGGGTTTGTCGTGTCATCATGTGCTTTTTTTTTTTTAAATGCCTTTTACTGACCATCAGAAAATGTTGATTCTTGATTGTTCATGGCAAATATCTCAAATGCAAATGAATGTTTTTTGTTTTTCCAAAGGAAAATGCACATGGTGATTTGCGGAAAGCACTGGCAGATAGAGGCCTGCTCTGTTGAGATGCATCATGCATGAATCTGACATGTATTTAATCACACTAGCATTACAGTTTTCTACACCGGTGACGTCTGTTATTTTCTTCTTTCTCATACTTCTGCTTGTGATACTATCAAAAACCCTTTATATTTATAGACAATAGTTTATATTATTTCGTTCTTTAAAGAATAAA

Function

symbol description
fzd1 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human FZD1 (frizzled class receptor 1).

GO:

id name namespace
GO:0003149 membranous septum morphogenesis biological_process

KEGG:

id description
K02432 FZD1_7, fz; frizzled 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_02543856_02545475.mRNA True 3441 mRNA 0.48 1 2542368 2545808

Neighbor

gene id symbol gene type direction distance location
CI01000086_02403053_02403317 ZNRF2 coding downstream 139051 2402872 ~ 2403317 (-)
CI01000086_02400288_02400580 NA coding downstream 141760 2399858 ~ 2400608 (-)
CI01000086_02366362_02373059 SLC6A20 coding downstream 169309 2364331 ~ 2373059 (-)
CI01000086_02192695_02193522 NA coding downstream 348602 2192635 ~ 2193766 (-)
CI01000086_02032793_02044182 BRD9 coding downstream 498186 2032712 ~ 2044182 (-)
CI01000086_02610598_02642920 CDK14 coding upstream 64759 2610567 ~ 2642920 (-)
CI01000086_02886112_02888612 KDF1A coding upstream 339639 2885447 ~ 2890213 (-)
CI01000086_02893723_02895660 NA coding upstream 347613 2893421 ~ 2895833 (-)
CI01000086_02897831_02901375 TMEM222, TMEM222A, TMEM222B coding upstream 351996 2897804 ~ 2901375 (-)
CI01000086_02906694_02918246 WDTC1 coding upstream 360405 2906213 ~ 2918246 (-)
G299770 NA non-coding downstream 31098 2506190 ~ 2511270 (-)
G299766 NA non-coding downstream 40704 2501428 ~ 2501664 (-)
G299765 NA non-coding downstream 40956 2501132 ~ 2501412 (-)
G299739 NA non-coding downstream 78656 2463501 ~ 2463712 (-)
G299734 NA non-coding downstream 85028 2457127 ~ 2457340 (-)
G299609 NA non-coding upstream 1775 2547583 ~ 2606396 (-)
G299803 NA non-coding upstream 105205 2651013 ~ 2694979 (-)
G299805 NA non-coding upstream 107861 2653669 ~ 2654410 (-)
G299825 NA non-coding upstream 179787 2725595 ~ 2725834 (-)
G299861 NA non-coding upstream 330939 2876747 ~ 2877044 (-)
CI01000086_01852638_01897719 UBR5 other downstream 638949 1852146 ~ 1897719 (-)
G299528 NA other downstream 847191 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 1281131 1257926 ~ 1260025 (-)
G299107 NA other downstream 1415570 1126738 ~ 1126798 (-)
G299598 NA other upstream 319874 2865682 ~ 2868103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011108 fzd1 coding NC_007127.7 CM002900.2 53917415 ~ 53919115 (-)
eurasian perch (Perca fluviatilis) G71042 fzd1,LOC104958298,LOC104925482 non-coding NC_053118.1 CM020915.1 7295976 ~ 7300306 (-)
bowfin (Amia calva) AMCG00021512 fzd1,LOC106605515,LOC105910048,LOC107565291 coding CM030130.1 CM030130.1 20112413 ~ 20114095 (+)