XLOC_010923


Basic Information

Item Value
gene id XLOC_010923
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40336481 ~ 40340518 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022218
TCCAGTATGAAGAAAGCCAGTTCATACACCCATCCACATGCAGTCTCAGGCTGTCCGTGGCGACGCATCAAATCAGCAGCGCCAACCTAATTTCACCAAGAGGGACAGGTTTCATGGATTGACATGTTGATTCTGGAaaaacattccaatcagccaatcagaattaagggatctGTTCATCTTTTATGTTAAGTGTAGGCtcacggttaggtttatgcacttctacatgattgtcaTCCATTAACTATTATTCCACTCTTATTTTGGGATTAATATACAGTTATGGTTGGGGCTAGGGAACAGGTATTGATTACATTACATAGATATTAATCCAGAATCACATTGTACTTGGCAACATCATGACATGCAGCATATTAGTTTTTTACCAACCATGTTACACTAAAGACTGGAATAATGATATTGAATATTCAGCTTTgccactaaaataataaaattacacattttcaaaaatgtatctAGACAGAAAACATTTGGCACTGCTAACATATTTGACAATTCTACTGTTATTACTggttattttgatcaaataaacagtgttttaccTAACATAAATGACGTCTTACCGACTGACCGTCAACATCCATCATAAACAACTTACACATTAACACTCACGTCTtgatttgtgtttaaaagaaacagTCGGGATGTTTAGGAGTGATGTTTTTTAGCGCCGCAGTGTTTACACTTTTCGGGAAAATGACTTACAGTGTCTGCACATTAATCTGGGATAAGAGAAAGTGCTGTAACCAGATAAAGTACACACACAATACGAGCGGTCAGAGTTTGGCAGGAATCGGGGCTGATTTATTCCCTGTGCAGGCGTGTTGAATCATCCTATCATTGTATTAATCAGACTTTAGTGATTTTCCCATCATCCCTCATCTCTCTCCCGCTCCAGATGGCATTACTCATTCACCCTAAGATGACCATTGTTCTTCATTTTGGGCTGTTTTGCTTGGGAGACGTCCCTTCAGCAGTCATCACCTCCATTTAAAAGTATTCTCCATAGATTATTAAGGGTTTGATGGAGGCCAGGTTGAGGACACATTTATAAAGTTGTGAAACAGCAGAACCATCTgctgtgttgtgtgagtgctagtGTCTGGTCTGGACCACAAGATGACAGTCTTGTACAACAACTGTTTCcattttgtttttctctctttcgCACTGTCACATTGTCAAAGGTTAGTTGATATGAGGGACTCTTAGAAATGAAGctgtaaaatagatttttttcatgCCAATATTTTCttctccactgtaaaaaaataagagTTTGCTTTTTATAAGCGAAATTAAGTCTTTTCAACTTCTATTACATCATACTGACCTCAAACATTAAGTTAagaagtaaatatatatttatacacaaacatacatacatacatacatacatacagggatgggcagtatttatgatacaatattttaaatttgcattttaaattcaaaattgtattttgtaatttgt
>TCONS_00021367
ACTGCGCGGAGATGAAGGAAGGAACTTGAAGATAACCGTCACCGCCATCTGCTGGACTGGAGACCACGACGACAAATGTTTCAGCTAATAAAACTTGACTTCTTGACGAACGTTTGTGGAATGGATACAATAAAAGCACTTTTCTTAGAGGTCTTAACAGTGATGTGCTGGACAGGATTCAGCAATTAGTTTAGTGTAATGTTACGTGGGGACAAAGCATTTCAAATTGGTGGTATCATTCTAAAGAAATCCACGAGGTGCTTTTGATTTCTGGTCAGATGGCTTCGATGGAAAGCTCGGATCCTGTTTATACAGACAGGCAAATCAACACTTTGTTTGGAGAGAGAATGGAACGAAAAGTTAATACACTGTTGCGGCGAAGATTGTTGTCGCTCATCCAGTATGAAGAAAGCCAGTTCATACACCCATCCACATGCAGTCTCAGGCTGTCCGTGGCGACGGTAAGCAtgctcatttaattttaatttactcaACCCCCGCCCTCCTCCAAAAAAATACAGACGTTTATACAAAAACTCTACTTTAATGTCTTAAAAACCTACATTCAAACCACGATGCAGTGCTGTACCTGGACcccgtttaaaaaaataaaccattcCACGGATCTTAGGACATTCCTGGCCCCTGTTACACAGTTCAGCCTCAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097565

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022218 False 1495 lncRNA 0.36 2 40336481 40338855
TCONS_00021367 True 668 lncRNA 0.43 2 40338584 40340518

Neighbor

gene id symbol gene type direction distance location
XLOC_010922 BX470182.3 coding downstream 181057 40138033 ~ 40155424 (-)
XLOC_010921 si:dkey-29b11.3 coding downstream 293159 40040813 ~ 40043322 (-)
XLOC_010920 CT025588.1 coding downstream 298685 40036711 ~ 40037796 (-)
XLOC_010918 rbms3 coding downstream 435816 39643268 ~ 39900665 (-)
XLOC_010919 CR626944.1 coding downstream 451230 39885134 ~ 39885251 (-)
XLOC_010924 si:dkey-242e21.3 coding upstream 13298 40353816 ~ 40373836 (-)
XLOC_010925 plekhf2 coding upstream 85355 40425873 ~ 40459104 (-)
XLOC_010926 ndufaf6 coding upstream 147214 40487732 ~ 40508624 (-)
XLOC_010927 BX324007.2 coding upstream 181220 40521738 ~ 40584050 (-)
XLOC_010928 si:dkey-22o22.2 coding upstream 253610 40594128 ~ 40841363 (-)
XLOC_010626 CR392024.2 misc downstream 19441306 20895112 ~ 20895175 (-)
XLOC_010917 NA non-coding downstream 711119 39612894 ~ 39625362 (-)
XLOC_010909 BX296552.2 non-coding downstream 1226550 39029883 ~ 39109931 (-)
XLOC_010908 NA non-coding downstream 1311484 39000013 ~ 39024997 (-)
XLOC_010929 BX324007.1 non-coding upstream 341410 40681928 ~ 40682703 (-)
XLOC_010930 NA non-coding upstream 609350 40949868 ~ 40957633 (-)
XLOC_010933 NA non-coding upstream 702476 41042994 ~ 41049894 (-)
XLOC_010934 NA non-coding upstream 762973 41103491 ~ 41108712 (-)

Expression


Co-expression Network