XLOC_010918 (rbms3)


Basic Information

Item Value
gene id XLOC_010918
gene name rbms3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39643268 ~ 39900665 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021357
ccaTTACACAGACATCACTGGGAAAGCGCACACACGGATAAATAATAGCTCTCATGCCACAGTCTAACTGTCACAGTGATGTTTCTATATCTGACTGCCGTGtctgtcagaaaaaaaatagattgaaCGCTCGGCGTGTAAGTTATGCGGTTCAAAAGCTTTAACTTACTGGATCAGTCGGGCTGGACGCCATAATTCAGATGACGCGATTTCATATAACCTCTACAGTGAGGGATGAATGTACATCAGTCAGTCTACAGTCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACCGTATGGAAAAATAGTGTCAACAAAGGCAATCCTGGACAAAAACACCAACCAGTGCAAAGgatATGGCTTTGTGGATTTCGACAGTCCGGCAGCGGCGCAGAAAGCTGTAGCGTCCCTGAAGGCCAGCGGCGTGCAGGCACAGATGGCAAAGCAACAAGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCGATGGATGAACAAGAGTTGGAGAACATGCTGAAGCCTTTCGGACATGTCATCTCCACACGGATACTCCGAGATGCCAACGGGGTCAGCCGAGGGGTCGGTTTTGCCAGAATGGAGTCCACTGAGAAATGTGACGTGGTGATTCAACATTTCAACGGAAAGTTTCTCAAAACCCCACCAGGAGTTCCAGCCCCGACGGAGCCGCTGCTGTGCAAGTTTGCAGACGGGGGACAGAAGAAGAGGCAGAGTCAGAGCAAGTACCCTCAGAATGGACGACCGTGGCCCCGGGAAGGAGAGAGTGGCATGGCGCTGACCTATGACCCCACCGCAATGCAGAACGGGTTCTACTCCTCACCCTACAGCATCTCCACAAACCGCATGATCGCTCAAACGTCAATCACTCCATTCATCGCAGCCTCTCCTGTCTCCACATATCAGGTCCAGAGTACGTCGTGGATGCCTCACCAACAGTACGTTATGCAACCTACGGGTGCTGTTATAACGCCAACCATGGACCACACCATCTCCATGCAGCCTGCGAACATGATGGGACCCCTCACCCAGCAGATGAACCACCTGTCTCTGGGCACCACTGgcactTACATGACTGCGGCTGCTGCTCCTATGCAGGGGACCTATATTCCCCAGTACACTGCGGTGCCTGCCTCTGCTGTCTCAGTGGAGGGAGTGGTGACGGATGCTTCTCCACAGAGCGTTCCAGCCTCGTCACAGGACGCCAGCGGGCAGCAACAGGCTCTGGGTGTGGAAAACACCAGCGATCACGCGCCCACCTACTCTTTTCAGCCCGCCAAATAACCAGAGGAGGAGCGGGGTGCTGAGGTGACTGCGTTGCCTTGAGACTGGGGGACTGCAACGAGGGAACATTGAAGACAGAGCGCAAGAGATAGGAAAACACGTTTGTGTCTACTTTTGCACAAGcatctaaaaaacaacaacaaacaaacaatttatttaacaCCTGGCCCACAGCGGAGGACCTTTGGAGAAACTCACAACCAGATGGGAAACCAGATGAGAAATGCAGTCTGGGCTACcctgatgaaaaaaaaactttaccttcATGAAGTGAACGAATTCAAACAAGTACAAGTTttccta
>TCONS_00021358
CCAGCTACATGGGCAAACGCTTGGAACAGCAACCAATGTACCCCCAGTACACTTACTATTACCCTCACTACCTTCAGACTAAGCAGTCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACCGTATGGAAAAATAGTGTCAACAAAGGCAATCCTGGACAAAAACACCAACCAGTGCAAAGgatATGGCTTTGTGGATTTCGACAGTCCGGCAGCGGCGCAGAAAGCTGTAGCGTCCCTGAAGGCCAGCGGCGTGCAGGCACAGATGGCAAAGCAACAAGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCGATGGATGAACAAGAGTTGGAGAACATGCTGAAGCCTTTCGGACATGTCATCTCCACACGGATACTCCGAGATGCCAACGGGGTCAGCCGAGGGGTCGGTTTTGCCAGAATGGAGTCCACTGAGAAATGTGACGTGGTGATTCAACATTTCAACGGAAAGTTTCTCAAAACCCCACCAGGAGTTCCAGCCCCGACGGAGCCGCTGCTGTGCAAGTTTGCAGACGGGGGACAGAAGAAGAGGCAGAGTCAGAGCAAGTACCCTCAGAATGGACGACCGTGGCCCCGGGAAGGAGAGAGTGGCATGGCGCTGACCTATGACCCCACCGCAATGCAGAACGGGTTCTACTCCTCACCCTACAGCATCTCCACAAACCGCATGATCGCTCAAACGTCAATCACTCCATTCATCGCAGCCTCTCCTGTCTCCACATATCAGGTCCAGAGTACGTCGTGGATGCCTCACCAACAGTACGTTATGCAACCTACGGGTGCTGTTATAACGCCAACCATGGACCACACCATCTCCATGCAGCCTGCGAACATGATGGGACCCCTCACCCAGCAGATGAACCACCTGTCTCTGGGCACCACTGgcactTACATGACTGCGGCTGCTGCTCCTATGCAGGGGACCTATATTCCCCAGTACACTGCGGTGCCTGCCTCTGCTGTCTCAGTGGAGGGAGTGGTGACGGATGCTTCTCCACAGAGCGTTCCAGCCTCGTCACAGGACGCCAGCGGGCAGCAACAGGCTCTGGGTGTGGAAAACACCAGCGATCACGCGCCCACCTACTCTTTTCAGCCCGCCAAGTGA
>TCONS_00021359
CTGGACCAATCAGATGCAATATTGCCATCAACTGCGACTGGAGCACGAGGCCAGCAGAATACGCGGAAGCAGGGGATATTGAACGCAGTCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACCGTATGGAAAAATAGTGTCAACAAAGGCAATCCTGGACAAAAACACCAACCAGTGCAAAGgatATGGCTTTGTGGATTTCGACAGTCCGGCAGCGGCGCAGAAAGCTGTAGCGTCCCTGAAGGCCAGCGGCGTGCAGGCACAGATGGCAAAGCAACAAGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCGATGGATGAACAAGAGTTGGAGAACATGCTGAAGCCTTTCGGACATGTCATCTCCACACGGATACTCCGAGATGCCAACGGGGTCAGCCGAGGGGTCGGTTTTGCCAGAATGGAGTCCACTGAGAAATGTGACGTGGTGATTCAACATTTCAACGGAAAGTTTCTCAAAACCCCACCAGGAGTTCCAGGCAAGACGGAGCCGCTGCTGTGCAAGTTTGCAGACGGGGGACAGAAGAAGAGGCAGAGTCAGAG
>TCONS_00021361
GAGCACGAGGCCAGCAGAATACGCGGAAGCAGGGGATATTGAACGGTGTTGCATATCGGTCCTCGTATGAAAATATGGATCCTAATACACAGTATTTcattgCAGTCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACCGTATGGAAAAATAGTGTCAACAAAGGCAATCCTGGACAAAAACACCAACCAGTGCAAAGgatATGGCTTTGTGGATTTCGACAGTCCGGCAGCGGCGCAGAAAGCTGTAGCGTCCCTGAAGGCCAGCGGCGTGCAGGCACAGATGGCAAAGCAACAAGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCGATGGATGAACAAGAGTTGGAGAACATGCTGAAGCCTTTCGGACATGTCATCTCCACACGGATACTCCGAGATGCCAACGGGGTCAGCCGAGGGGTCGGTTTTGCCAGAATGGAGTCCACTGAGAAATGTGACGTGGTGATTCAACATTTCAACGGAAAGTTTCTCAAAACCCCACCAGGAGTTCCAGGCAAGTGTCAACAACGCAGTGTGTTCTGACAATATTGTGTGCTAACCAGGTGCAAAGCCATAAAATGACAATCAACCAGACATTTTGTGGCCCAATTgctgtctgtctttttttttctgctctgTCCCCAGTAAAATCCCTTTGCTCTAAAGTCCCTCTCCATATAACTGTAAATTGAAagaatagttcagccaaaataaCATCATTTACCCGC
>TCONS_00021360
ATAATTCAGATGACGCGATTTCATATAACCTCTACAGTGAGGGATGAATGTACATCAGTCAGTCTACAGTCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACCGTATGGAAAAATAGTGTCAACAAAGGCAATCCTGGACAAAAACACCAACCAGTGCAAAGgatATGGCTTTGTGGATTTCGACAGTCCGGCAGCGGCGCAGAAAGCTGTAGCGTCCCTGAAGGCCAGCGGCGTGCAGGCACAGATGGCAAAGCAACAAGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCGATGGATGAACAAGAGTTGGAGAACATGCTGAAGCCTTTCGGACATGTCATCTCCACACGGATACTCCGAGATGCCAACGGGGTCAGCCGAGGGGTCGGTTTTGCCAGAATGGAGTCCACTGAGAAATGTGACGTGGTGATTCAACATTTCAACGGAAAGTTTCTCAAAACCCCACCAGGAGTTCCAGGCAAGTGTCAACAACGCAGTGTGTTCTGACAATATTGTGTGCTAACCAGGTGCAAAGCCATAAAATGACAATCAACCAGACATTTTGTGGCCCAATTgctgtctgtctttttttttctgctctgTCCCCAGTAAAATCCCTTTGCTCTAAAGTCCCTCTCCATATAACTGTAAATTGAAagaatagttcagccaaaataaCATCATTTACCCGC
>TCONS_00021362
CACGAGGCCAGCAGAATACGCGGAAGCAGGGGATATTGAACGGTGTTGCATATCGGTCCTCGTATGAAAATATGGATCCTAATACACACAGTCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACCGTATGGAAAAATAGTGTCAACAAAGGCAATCCTGGACAAAAACACCAACCAGTGCAAAGgatATGGCTTTGTGGATTTCGACAGTCCGGCAGCGGCGCAGAAAGCTGTAGCGTCCCTGAAGGCCAGCGGCGTGCAGGCACAGATGGCAAAGCAACAAGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCGATGGATGAACAAGAGTTGGAGAACATGCTGAAGCCTTTCGGACATGTCATCTCCACACGGATACTCCGAGATGCCAACGGGGTCAGCCGAGGGGTCGGTT

Function

symbol description
rbms3 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Acts upstream of or within regulation of cartilage development and regulation of transforming growth factor beta receptor signaling pathway. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including brain; fin bud; hatching gland; otic vesicle; and tail bud. Orthologous to human RBMS3 (RNA binding motif single stranded interacting protein 3).

GO:

id name namespace
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0061035 regulation of cartilage development biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008143 poly(A) binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008266 poly(U) RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-244 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Acts upstream of or within regulation of cartilage development and regulation of transforming growth factor beta receptor signaling pathway. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including brain; fin bud; hatching gland; otic vesicle; and tail bud. Orthologous to human RBMS3 (RNA binding motif single stranded interacting protein 3).

Ensembl:

ensembl_id ENSDARG00000044574

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021357 False 1733 mRNA 0.52 14 39643268 39859119
TCONS_00021358 False 1256 mRNA 0.56 13 39646321 39900665
TCONS_00021359 False 696 mRNA 0.55 7 39685241 39858759
TCONS_00021361 False 863 lncRNA 0.50 6 39742245 39858719
TCONS_00021360 False 827 lncRNA 0.50 6 39742245 39858928
TCONS_00021362 True 548 mRNA 0.55 5 39745170 39858716

Neighbor

gene id symbol gene type direction distance location
XLOC_010917 NA coding downstream 17906 39612894 ~ 39625362 (-)
XLOC_010916 tgfbr2b coding downstream 37607 39505163 ~ 39605661 (-)
XLOC_010915 stt3b coding downstream 165522 39385483 ~ 39477746 (-)
XLOC_010914 gpd1l coding downstream 376041 39248644 ~ 39267227 (-)
XLOC_010913 tmem42a coding downstream 401467 39237768 ~ 39241801 (-)
XLOC_010920 CT025588.1 coding upstream 136046 40036711 ~ 40037796 (-)
XLOC_010921 si:dkey-29b11.3 coding upstream 140148 40040813 ~ 40043322 (-)
XLOC_010922 BX470182.3 coding upstream 237368 40138033 ~ 40155424 (-)
XLOC_010923 NA coding upstream 435816 40336481 ~ 40340518 (-)
XLOC_010924 si:dkey-242e21.3 coding upstream 453151 40353816 ~ 40373836 (-)
XLOC_010626 CR392024.2 misc downstream 18748093 20895112 ~ 20895175 (-)
XLOC_010909 BX296552.2 non-coding downstream 533337 39029883 ~ 39109931 (-)
XLOC_010908 NA non-coding downstream 618271 39000013 ~ 39024997 (-)
XLOC_010907 NA non-coding downstream 693121 38948644 ~ 38950147 (-)
XLOC_010905 NA non-coding downstream 839116 38802405 ~ 38804152 (-)
XLOC_010927 BX324007.2 non-coding upstream 621073 40521738 ~ 40584050 (-)
XLOC_010929 BX324007.1 non-coding upstream 781263 40681928 ~ 40682703 (-)
XLOC_010930 NA non-coding upstream 1049203 40949868 ~ 40957633 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_00885996_00887374 NA coding CI01000016 null 885996 ~ 887478 (+)
bowfin (Amia calva) AMCG00002479 NA coding CM030136.1 CM030136.1 16343098 ~ 16459211 (+)