AMCG00002479


Basic Information

Item Value
gene id AMCG00002479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16343098 ~ 16459211 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002479
atgaatggtaCCAATCTAAGCTATGGAAAAATAGTGTCAACAAAGGCAATCCtggacaaaaatacaaatcagtgcAAAGgcTATGGCTTTGTAGATTTTGACAGCCCTGCAGCAGCACAGAAAGCAGTTGCGTCCCTCAAAGCCAGCGGAGTACAGGCGCAGATGGCAAAGCAACAGGAACAAGACCccacaaacctgtacatttccAATTTGCCCATCTCGATGGACGAGCAGGAGCTGGAGAACATGCTAAAGCCATTTGGGCATGTCATCTCCACACGGATACTGCGAGACGCCAATGGGATCAGCAGAGAAAGAAAGCAATCTGGGAAAGGGAGTACCCCCACAGAGCCTTTGCTGTGCAAATTTGCCGATGGAGGGCAAAAGAAGCGacaaaatcaaagcaaataTCCTCAGAATGGGAGACCATGGCCCAGAGAAGGAGAGATTTTATTCTTCACCATACAGTATTGCCACAAATCGTATGATTGCACAGACATCCATCACACCGTTCATCGCTGCTTCTCCTGTATCAACATATCAGGATTTGAATGCAGGCTGTCAGCATACTGA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002479 True 573 mRNA 0.47 9 16343098 16459211

Neighbor

gene id symbol gene type direction distance location
AMCG00002478 rbms3,LOC106588200,LOC107713827,LOC107600516,LOC107730162 coding upstream 6379 16270456 ~ 16336719 (+)
AMCG00002476 NA coding upstream 217276 16124380 ~ 16125822 (+)
AMCG00002471 NA coding upstream 369951 15970084 ~ 15973147 (+)
AMCG00002469 tbx20,LOC107719124,LOC107686728,LOC107600539,LOC107737833 coding upstream 408664 15922805 ~ 15934434 (+)
AMCG00002468 NA coding upstream 490613 15851347 ~ 15852485 (+)
AMCG00002480 NA coding downstream 76436 16535647 ~ 16570427 (+)
AMCG00002482 LOC102294068,LOC100692553,LOC101478849 coding downstream 162308 16621519 ~ 16651406 (+)
AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding downstream 277473 16736684 ~ 16750596 (+)
AMCG00002484 NA coding downstream 294885 16754096 ~ 16769522 (+)
AMCG00002485 tmem42,LOC107394544,LOC103356608 coding downstream 310491 16769702 ~ 16774759 (+)
G123388 NA non-coding upstream 547949 15794408 ~ 15795149 (+)
G123386 NA non-coding upstream 653135 15689601 ~ 15689963 (+)
G123295 NA non-coding upstream 1002929 15262949 ~ 15340169 (+)
G123197 NA non-coding upstream 1650322 14691981 ~ 14692776 (+)
G123171 NA non-coding upstream 1973185 14369093 ~ 14369913 (+)
G123468 NA non-coding downstream 26615 16485826 ~ 16489952 (+)
G123525 NA non-coding downstream 192331 16651542 ~ 16651964 (+)
G123526 NA non-coding downstream 194288 16653499 ~ 16654884 (+)
G123568 NA non-coding downstream 332889 16792100 ~ 16792799 (+)
G123653 NA non-coding downstream 632764 17091975 ~ 17148336 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 1981562 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3213401 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3272266 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3291127 13031759 ~ 13051971 (+)
G122746 NA other upstream 4202633 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 498950 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 517077 16976288 ~ 16985906 (+)
G123807 NA other downstream 1456225 17915436 ~ 17984730 (+)
G123989 NA other downstream 2372803 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2614482 19073693 ~ 19127947 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010918 rbms3 coding NC_007127.7 CM002900.2 39643268 ~ 39900665 (-)