AMCG00002437 (pcbp3,LOC108266078,LOC107657516,LOC107728912)


Basic Information

Item Value
gene id AMCG00002437
gene name pcbp3,LOC108266078,LOC107657516,LOC107728912
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14327632 ~ 14361536 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002437
ATGCGAGCTGCCATTCTTGCCTTCCGGAAGAGGCCAGTGAGcaagTTCCTTTGTTTTGACGTCCCCCCTCTGGGGCTGATCTCCTCTGAGTCCCAAACCCAGTCAGACCACGGGCAGAGGGTGTTTCTGTGTAATCCTGAAGACCAGCAGCTCTGCAAAGCCACAGCCATCATgaatatgaacatgaacatgacgATGAATATGAACTCCAAGGATGGGAAAGTGTCAGAGGGAGGTCTAAATGTCACACTTACAATACGATTACTGATGCACGGAAAGGAAGTTGGCAGTATAATTGGGAAGaagggAGAAACAGTCAAAAAGATGAGGGAAGAGAGCGGCGCTCGAATCAACATTTCAGAAGGGTCCTGCCCAGAGAGGATTGTCACAATCACAGGCCCCACAGATGCCATTTTCAAAGCCTTTTCCATGATAGCACTGAAGTTTGAAGAGGACATAAACGCTTCAATGACAAACAGCACGGTGACAAGTAAGCCCCCCGTGACCCTGAGGCTGGTGGTCCCGGCAAGCCAGTGTGGCTCATTAATAGGAAAAGGAGGGTCCAAGATAAAGGAGATCAGAGAGACCACAGGGGCTCAGGTACAAGTAGCGGGAGATATGCTTCCGAACTCCACAGAGAGAGCCGTCACTATCTCAGGCACCCCCGACGCCATCATCCAGTGTGTGAAGCAGATATGTGTGGTGATGTTAGAGTCTCCGCCCAAAGGTGCCACCATCCCATACCGTCCCAAACCAGCGTCAGCCCCCATCATCTTCGCGGGTGGCCAGGTCAGAGCAGACACTATCTTGGCGTCCGCAGGGAACCATACTGTCCTGGCACAACCACAGCCAGCACCCGATGTGCCTGAGCTCTGGTCAGCAGGCCCCAAGACCTTCACAATTCAGGGGCAGTATGCTATTCCTCATCCAGATTTGACCAAGCTTCACCAGTTGGCTATGCAGCATACCCCCTTTACTCCCCTTGGGCAGAACAATCCTGCCTTCCCTGGACTGGACGCCACCACTCCTACTAGTTCTCACGAGCTAACAATCCCAAACGATTTAATTGGCTGCATTATCGGCAGACAAGGCAGTAAGATTAACGAGATCAGGCAGATGTCCGGTGCGCAGATCAAGATCGCCAATGCAATTGAAGGCTCGGCGGAAAGACAGGTTACAATCACAGGATCCCCGGCAAACATCAGCTTAGCACAGTACCTCATTAACGCCAGCTTAGAGATGGCTAAAGTCAGCACCCAGACCGCTTCCGTCTCGAACCCTGTTGACCTCAACATGAACCTCTCTCAGTCTGCCACCCCTACCTCCACCCCTACCTCTATGGCTGTCCtggcagctgcagcagcagcgtCTGCCGCGGTTAACGTCAATTCCCCTCCCCCCTTACCGACTTTACCGACCACCCACTATGCCGTTCCTGTCTCCAGTCTGCTTGGCATGAAAACTGTCCCACTCCTGGCGTTAAATGCCGCGGCCGCCACGGGGGCCACGGGGAGTTTATCTGCTTATACCACTAAAATCCCAACGACGACCGGGGTTAAGAAATCTGATCGCCAGAAGTTTGCTCCGTATtgagaaaaaatgaaagaatgcaagggttttatttcttttcttttctttttcttttttcctttacaAGTTTACTCAAGATTCTTGAGTATTATaatagtatataaaatataaaattataaaatagacatacaactttcttttcttttccttttcctttctcttctttttttaaaaaataagaaaataagaaaaaaaagcaaaacaaatcaaaacaaaaacaggcaaCCTGCTGGTTTATACATGTTTGCACCTCCAACTGTCTTCCATTCTTCTTTGTGAcctaacaaaactgaaataattatttccaacaGCAACAAAGCTCACTCTCAGTCTGCTCCACTTTTAAATCTTAACTCCTTCCACTGTTGcattggatttatttatgtattcattttaacctGAAGGAGTTTCACTCTTGCAACGTTTCTTAAAGAAGATGAAACGGAAAGTTTGCAGCATTAATTAGTGAGACGGCCTCTTGTTGTCCTTCCCCATGGGTACGCTGCCACACGCGGATCTCCGTGGTGTTTAAATCTGCAGCTGTGTGGAAGTGTAGGTCATTGAAAAGGATTTATAATAGACTCCATGTTTGTGAAATGAAAGAATACAAGAcattaacatgaaaaacacactGGCATGTGTAACCCAGTGGCAATGTGAAGTTCTGTATTCACTCTTCATTACACTGTGCGCTGAACAGGCCAGAGCATCGGTGCACAGAAACACTGCCACTGCCCCTGGCTAATGGAAATATTTCAAACCTTTCCATTAAATTTCAAGATTTACATTGAGgcagttttttaaatgtctattaaatacaatcagtgtCTCGGTGGTGTATCCCTTATAATTTAACCCATGCTctaatttataatatttataattaagcTATCTGCTACATAAGATATGCTACTTTTATGTATGATTaaattttacttatttacttatttttaactttttaacttaAATTTTAACTGAACACATAGAAGGAtcatcaacattattattattattattattattattattattattatt
>TU154415
cattattattattattattattattattattattattattattattattattattattattattagtgagtcttaatatcaatttaaagaCGCTAATCAACAATCCTTAAGTTGAACAGTCCATCCTGAATATAATGCTATGTTCGGGGGTGTTAATtttgttgtattgatttgtatttaattaatcacattaatTGCACAACCTATTTTCAAACGTACTGGACATTTAGATCAATACTAAGTCAGCACTGGACACCCCCTCAGCTGCATGGTCAGTCTCCTcctctttgtgtttatttggcACGCATGGCTCACCCTCCCCGGCTCCTCGCTCCACTATATGGCATCATCTAAGACTGCAGATGGCAACCAATAGTAACACATAACATGGATTAGGCAATTTTGTGGTATTAAGTACTGAGTAATTACCTGTGTACTATAGAGTATTCTGTAAATTGTACTTTCACCTATTTACAATGTAAGTAATGTATAACtactgtattaaattaatacacatcTGCATGTGTAATTACTTAacatgaaatgtaattacacattACTTAAATTGTAACTATACACAAGGTACAGtgtaaatactatatatatatatatagatacctAAGTAATTATtccttacattattattattccttaattaatgtaatgtgttacTCAATgatcagttgttgtttttgttacttacttatttacatacatactttCTTACTGTATTAACAGGAAACTATGGTAAGAGACCTTGGGCTTGTTTGACATGTTTTAAACATATGAGGAGGGTTGTTATCAATTCAACAATTGTTCTCCCATAGATATAGGCTGcaataatgatttatattttagttacaCCAATCATTTACGTCATAGAACTTCATTAGGGTCAGGAATTTaattttggaaaatataaattaattagtttttgcttttgcttccccccccacacacacacaNNNNNNNNNNCCCCCAAAGTTATTAGGTTGAAAGTATAATTATACGTATTGAAGCAAATGCATCATGTGACccttgagaaaagaaaaagagtagGCAGAACCAGGCATATGACTGAAAGTTATTCTTTATTCAAAGTGCAGTATGTTTTGAAACTTATATTCACAAATGGGGAGGGAATTTGTTGATATTTGTTGAATATTaccaataattataataatgatacaacTAGCAGATGGTTTTCAAGGTAATGTACATGTTTAGTCAAACGtctgaaaagagaaaagattTGCTTTCGTTTAAAGgtaatgttttagtttaatataatgtaaatagtGTCACAGTTCAGTTTCTTTAAAACTGAGACTAATGTGATTTCAGCTAATTATTACTGGTAGTCTAAGTATTGGaaatattattaacaacaagCCAACATAAAATCCATCAGTgagt

Function

symbol description
pcbp3 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; otic vesicle; pleuroperitoneal region; retina; and tail bud. Orthologous to human PCBP3 (poly(rC) binding protein 3).

NR:

description
PREDICTED: poly(rC)-binding protein 3 isoform X9

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K21444 PCBP3_4; poly(rC)-binding protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002437 True 2628 mRNA 0.45 15 14327632 14360178
TU154415 False 1416 lncRNA 0.30 2 14353397 14361536

Neighbor

gene id symbol gene type direction distance location
AMCG00002429 ino80c,LOC107706244 coding upstream 449835 13867114 ~ 13877797 (+)
AMCG00002424 tmem245,LOC103353896 coding upstream 609171 13700250 ~ 13718461 (+)
AMCG00002423 frrs1l coding upstream 631030 13691020 ~ 13696602 (+)
AMCG00002422 NA coding upstream 671074 13655239 ~ 13656558 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding upstream 816349 13490178 ~ 13511283 (+)
AMCG00002440 NA coding downstream 37651 14399187 ~ 14459606 (+)
AMCG00002439 NA coding downstream 204863 14566399 ~ 14576984 (+)
AMCG00002442 NA coding downstream 244128 14605664 ~ 14614093 (+)
AMCG00002444 NA coding downstream 277340 14638876 ~ 14641950 (+)
AMCG00002441 ikzf1 coding downstream 294317 14655853 ~ 14666224 (+)
G123043 NA non-coding upstream 736951 13572519 ~ 13590681 (+)
G123041 NA non-coding upstream 756821 13566414 ~ 13570811 (+)
G123039 NA non-coding upstream 781332 13546064 ~ 13546300 (+)
G122929 NA non-coding upstream 1022033 13304697 ~ 13305599 (+)
G122914 NA non-coding upstream 1137770 13189282 ~ 13189862 (+)
G123169 NA non-coding downstream 3500 14365036 ~ 14366335 (+)
G123171 NA non-coding downstream 7557 14369093 ~ 14369913 (+)
G123197 NA non-coding downstream 330445 14691981 ~ 14692776 (+)
G123295 NA non-coding downstream 901413 15262949 ~ 15340169 (+)
G123386 NA non-coding downstream 1328065 15689601 ~ 15689963 (+)
AMCG00002393 NA other upstream 1197935 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 1256800 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 1275661 13031759 ~ 13051971 (+)
G122746 NA other upstream 2187167 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 2311548 12011971 ~ 12016084 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 2596625 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 2614752 16976288 ~ 16985906 (+)
G123807 NA other downstream 3553900 17915436 ~ 17984730 (+)
G123989 NA other downstream 4470478 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 4712157 19073693 ~ 19127947 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_06503211_06517041 NA coding CI01180000 null 6503211 ~ 6517102 (+)