AMCG00002388


Basic Information

Item Value
gene id AMCG00002388
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13044693 ~ 13070832 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002388
ATGTTTGCAAAGGAGGACGATCTGGAGGAGTACGACAAGATGATACCAGCCAGGAGGAAGTGGAACTGGCGGAACGAGAAGGGCGAGACGCCGCTGCACCGAGCCTGCATCGAGGGCAACCTGAAGGGGCAGgGTCACCCGGTGAACCCCAGGGATTTCTGCGGCTGGACCCCTCTTCTTGAAGCCTGTAACCACGGCCACCTGGTAGTGCAGCCTCTTAGTGCCCTGCAGGACAACCAGCTGTTCGATGCAGAGAACTTGGAACCACTGGAGAGCAGTCCCTCTGAGAGCGACGGTGACTCGGTCTACTCCATCAGCCCCTTGTGCCCCCCCTGGCCTCGCCTGCAGCCCCCCGCACCCCTTTCCCCGAGTGAGGAGGCCCCCcgaactgcagagagagagagtgcttcGCCCCCGGTCAGCAGGAAAGAGGAGTACCATCAAACCATCCAGAGCTTGGGTAGCACCAAGTCCCGCCTCCTCTCCCAGAGCCTATCAGAGCAGGAGCGCACCCCCCCTGCCCCTACACCATCGGCCAATAGCAGGTCAGCTCTAGTGGAGGAGTCCGTGGAAGATGATTGGCTGGAGGACGATCTGGGAGGGGCTCAGCCCAGGAAGAGGCGAAGAGTGGGATCTGGGCAGGAAGGGAGGAGAGAGCCTGACATTCCCTCTGCAGACACAAGGGGGCAGGAGAGCTCCTTGGCAGCTCCAGAGTCTACCCCTAGAAGTGGATATAAGTACAGGCCCtcacttcaaaataaaagtgGCTGCCCTCACAGCCCCACCGATGACACGCCTGCCCAGCCCACGTACCCGCAGACACAGAGtgcaacaaatacatacacagtggCAGGGCAGCCTCCAGCCCAGTCGAAGCCCTTGGGCACCTCTCTGCCTGCACCAATCAGAGTGAGGGTCAGAGTTCAGGACAATGTCTTCCTCATTCCAGTTCCCCACAGGGATGCACACCCCTGTCCTGCCCCAGCCTCTGATGAGGTCATAACTAATTCGAGACCGACCATCAGCCTTTGTGAGGTGCAGGCGGGCAGCCCCTCCCTGAGTGTCTGTGGGCTCAGCCTGCCCCCCGCCGCCCTGTGCCCGCTGCTGCGCTGCCTGAAGCTGCAGGCCGACCTGAAGGAGCTCCGGCTCTCGGGCAACCGTCTCCACGACGGCCTGATGGCGGAGCTGGCGCTGTCCTTGCTGCTGTCATCCTGCCCCCTGCTGGCCACACTCAGACTGCAGGCCTGCCAGCTCCGCACCCGCTTCTTGCAGCAGCACCGCCTCCTGTTGGCCAGCGCTCTGGCAGGAGCCCTGcagaccccccccaccaccgaGCACCTGACGGCACACCTGTCCCAGTTGGGGGACCTGTGCTGCAAGCTGGGCTGCTACAGCAAGGCCCTGGATGCCTACCACACACAGcTGTCCAGCGCTTTGGCCCTGGGGAGGCCATCTCGGGAGCTGGCTGTGATCCACGTGTCTCTGGCCGCGACCTACACTGACCTCCGGCAGCATGACAAGGCTGTCCAGCACTACAGACAGGAGCTGAGTCTGAGAGAGGGCAACCCCAAAGAGGAGTGTGAAACCTGGCTGAATATCGCAGCGTCCCTGGAGGACAGTGGACAGGGCCTGGAGCAGCTGGAGCCCTGCTACCGCACAGCCCTGGAGTGTGCACAGAGAGCACAGCGGCTCAAGCTACAGTGTCGGGTGTTGAGGCAGTGGCTTTCAGTGCAGCAGCGGGGGGGCTCGGCGCAGTCCGAGCTGACGGCGGCTTCGCTGGCAGAGCTGTGTGGTGCAGACGGTGCTGACGGAGAgagcgaggaagaggaggaggaggaggaggaggagaacagTGAGCTCCTAGATGACAGTGACATTCATCTCTCTGACTCAGAGGAGGACGATCTGGAGGAGTACGACAAGATGATACCTGGCAGGAGGAAGGTCAGCCGGTGGAACCGGCGGAACGAGAAGGGCGAGACGCCGCTGCACCGAGCCTGCATCGAGGGCAACCTGAGGGGGGCACAGTGCCTGCTGGAGCAGgGTCACCCGGTGAACCCCAGGGATTTCTGCGGCTGGACCCCCCTTCATGAAGCCTGTAACCACGGCCACCTGGAGATTGTGCGGGCGCTGCTGGACCAGGGGGCAAATGTGAATGACCCTGGGGGTCCGCTGTGCGAGGGGATCACTCCACTGCATGATGCCCTGAGCTGCGGACACTTCCCCGTTGCCAGGCTGCTGGTTGAGAGGGGTGCCTGTGTCAGTCTTCGCAACTCGAAGGGCGACACACCCCAGGACAGCCTAAGGCAGTGGCTCAAGACCTACAGTAAACACCTGGACCAGGAGACACGGCAGGAGTGTGTTGAGATGGAGAGATTACTGAGGAGAGCAGCTGCTGGGAATGTGCCGGTGTCTGCGCCCCAGACCGTAGTGCAGCCTCTCAGTGCCCTGCAGGACAGCCAGCTGTTCGATGCGGAGAACTCGGAGCCACTGGTGCCTCCTGCCGGGCGCTGCTCTGGGGTCCCCTGCCGTAGTAGGGGCAGTGGGAATCTgggcagcaccagcagcagcagagggcGCTCCGGGGGCAGAGAGGAGGGATGGCGGAGACAGGCGGAGGAGGAGTGGAGCAGAGAGACAGCCCCTGCTCGGGAGAGCAGTCCCTCTGAGAGCGACGGTGACTCGGACTACTCCATCAGCCCCCTGCGCCCCCCCCGGCCTCGCCTGCGGCCCCCCGCACCCCTTTCCCCGAGTAAGGAGGCCCCCCgaactgcagggagagagagtgctTCGTCCCCGGTCAGCAGGAAAGAGGAGTACCATCGAGCCATCCAGAGCTTGGGTAGCGCCAAGTCCCGCCTCCTCTCCCAGAGCCTATCAGAGCAGGAGCGCACCCCTCCTGCCCCTACACCATCGCCCAATAGCAGGTCAGCTCTAGTGCCGGAGGAGGAGTACGTGGAAGATGATTGGCTGGAGGACGATCTGGGAGGGGCTCAGCCCAGGAAGAGGCGAAGAGTGGGATCTGGGCAGGAAGGGAGGAGAGAGCCTGACATTCCCTCTGCAGACACAAGGGGGCAGGAGAGCTCCTTGGCAGCTCCAGAGTCTACCCCTAGAACTCTCAGCGAGTCCCGCAGAGGTCTCTCTCTGCGGCGGGGGGGCGCTCGGGTACGGCAGGCGAAGATGACCCAGATGTCGGGCATGGTGATGCTGGGCCGCCGGGAGAGCGGCCGCCCTCACAGCCCCACCGCTGACATGCCTGCCCAGCCCATGTACCCGCAGACACAGAGtgcaacaaatacatacacagtggCAGGGCAGCCTCCAGCCCTGTCGCAGCCCTTGAGCACCTCTCTGCCTGCACCAATCAGAGTGAGGGTCAGAGTTCAGGACAATGTCTTCCTCATTCCAGTTCCCCACAGGGATGCACACCCCTGTCCTGCCCCGGCCTCTGATGAGGTCATAACTACTTCTAGACCTACCAGCAGCCCGGCCGACTCACTTACGCTTGATCTCCCGCGACGAGCTCATCCTGTCCGGGCCAGCCTCCGGCTCGTGTTTCCCAGTCACCTTACTGGGCTGCTTCCACTGACCCGCAGAGCAGCACTGCGCATGCGCTACGCCTGTCCCTTTAAAGAGCACCGTCACCTGAttatacacaacaaaacagctACAGCCAATCAGCGACGGCGCGGAGCCCTGGCAAGCGAAGCCACGGCGAGTACTGGCAACATACCCGCGGCCTGTCCACAACGGCGAATCCGATTGGCCGCAGCTGTGACCCTGGCTGAGCAATCAGCGATCTGA
>TU154058
TGAGCAGTTGGGGGACCTGTGCTGCAAGCTGGGCTGCTACAGCAAGGCCCTGGATGCCTACCACACACAGcTGTCCAGCGCTTTGGCCCTGGGGAGGCCATCTCGGGAGCTGGCTGTGATCCACGTGTCTCTGGCCGCGACCTACACTGACCTCCGGCAGCATGACAAGGCTGTCCAGCACTACAGACAGGAGCTGAGTCTGAGAGAGGGCAACCCCAAAGAGGAGTGTGAAACCTGGCTGAATATCGCAGCGTCCCTGGAGGACAGTGGACAGGGCCTGGAGCAGCTGGAGCCCTGCTACCGCACAGCCCTGGAGTGTGCACAGAGAGCACAGCGGCTCAAGCTACAGTGTCGGGTGTTGAGGCAGTGGCTTTCAGTGCAGCAGCGGGGGGGCTCGGCGCAGTCCGAGCTGACGGCGGCTTCGCTGGCAGAGCTGTGTGGTGCAGACGGTGCTGACGGAGAgagcgaggaagaggaggaggaggaggaggaggagaacagTGAGCTCCTAGATGACAGTGACATTCATCTCTCTGACTCAGAGGAGGACGATCTGGAGGAGTACGACAAGATGATACCTGGCAGGAGGAAGGTCAGCCGGTGGAACCGGCGGAACGAGAAGGGCGAGACGCCGCTGCACCGAGCCTGCATCGAGGGCAACCTGAGGGGGGCACAGTGCCTGCTGGAGCAGgGTCACCCGGTGAACCCCAGGGATTTCTGCGGCTGGACCCCCCTTCATGAAGCCTGTAACCACGGCCACCTGGAGATTGTGCGGGCGCTGCTGGACCAGGGGGCAAATGTGAATGACCCTGGGGGTCCGCTGTGCGAGGGGATCACTCCACTGCATGATGCCCTGAGCTGCGGACACTTCCCCGTTGCCAGGCTGCTGGTTGAGAGGGGTGCCTGTGTCAGTCTTCGCAACTCGAAGGGCGACACACCCCAGGACAGCCTAAGGCAGTGGCTCAAGACCTACAGTAAACACCTGGACCAGGAGACACGGCAGGAGTGTGTTGAGATGGAGAGATTACTGAGGAGAGCAGCTGCTGGGAATGTGCCGGTGTCTGCGCCCCAGACCGTAGTGCAGCCTCTCAGTGCCCTGCAGGACAGCCAGCTGTTCGATGCGGAGAACTCGGAGCCACTGGTGCCTCCTGCCGGGCGCTGCTCTGGGGTCCCCTGCCGTAGTAGGGGCAGTGGGAATCTgggcagcaccagcagcagcagagggcGCTCCGGGGGCAGAGAGGAGGGATGGCGGAGACAGGCGGAGGAGGAGTGGAGCAGAGAGACAGCCCCTGCTCGGG

Function

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0042555 MCM complex cellular_component
GO:0035101 FACT complex cellular_component
GO:0005662 DNA replication factor A complex cellular_component
GO:0042393 histone binding molecular_function

KEGG:

id description
K09257 NFKBIL2; NF-kappa-B inhibitor-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002388 True 3804 mRNA 0.63 25 13044693 13070832
TU154058 False 1301 TUCP 0.63 10 13058073 13061685

Neighbor

gene id symbol gene type direction distance location
AMCG00002391 NA coding upstream 20584 13021567 ~ 13024109 (+)
AMCG00002386 NA coding upstream 348565 12638486 ~ 12696128 (+)
AMCG00002380 NA coding upstream 797704 12244723 ~ 12246989 (+)
AMCG00002381 NA coding upstream 800805 12242286 ~ 12243888 (+)
AMCG00002379 NA coding upstream 803338 12226849 ~ 12241355 (+)
AMCG00002387 cyhr1,LOC107591623,LOC107742848,LOC107696565,LOC107706189 coding downstream 594 13071426 ~ 13085078 (+)
AMCG00002394 NA coding downstream 18584 13089416 ~ 13090383 (+)
AMCG00002400 NA coding downstream 69835 13140667 ~ 13141587 (+)
AMCG00002401 NA coding downstream 120197 13191029 ~ 13194076 (+)
AMCG00002402 NA coding downstream 157695 13228527 ~ 13237405 (+)
G122830 NA non-coding upstream 633552 12404942 ~ 12411141 (+)
G122829 NA non-coding upstream 671662 12372801 ~ 12373031 (+)
G122744 NA non-coding upstream 913946 12129878 ~ 12130747 (+)
G122743 NA non-coding upstream 915015 12128380 ~ 12129678 (+)
G122737 NA non-coding upstream 939170 12104670 ~ 12105523 (+)
G122911 NA non-coding downstream 117117 13187949 ~ 13188278 (+)
G122914 NA non-coding downstream 118450 13189282 ~ 13189862 (+)
G122929 NA non-coding downstream 233865 13304697 ~ 13305599 (+)
G123039 NA non-coding downstream 475232 13546064 ~ 13546300 (+)
G123041 NA non-coding downstream 495582 13566414 ~ 13570811 (+)
G122746 NA other upstream 904228 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1028609 12011971 ~ 12016084 (+)
AMCG00002355 NA other upstream 1145992 11894473 ~ 11898701 (+)
G122582 NA other upstream 1208524 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 1329321 11710450 ~ 11715372 (+)
AMCG00002393 NA other downstream 54546 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 1256800 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3887329 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3905456 16976288 ~ 16985906 (+)
G123807 NA other downstream 4844604 17915436 ~ 17984730 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_03069663_03095555 TONSL coding CI01000310 null 3069535 ~ 3095888 (+)