AMCG00002400


Basic Information

Item Value
gene id AMCG00002400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13140667 ~ 13141587 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002400
ATGGGTACGgtgctgtctctgtctcccgGGTCCAGAAAGGCCCATTTCTATGAGGACGGACCTGGCTCCCTCAGCCACTATGCCGGGCTGGCTGGCAGCAAGTCCCTAAGCATGCAGAAGGAGCGCAACATCAAGCGGCAGTCCATGTTCCTGCCTGCCATCACTTGGAAGCGGCTGGTGGCATCCACCAAGAAGAGGGGCTCCAAGAAGGCCGGGGGTGGTGGCGCGGGGGTGGggctgaacaacaacaacaattatcaGAAGGACGTGACACACTTGAACCATGAGAACGTCAAGAAGTCGCTGTCCTGCGCTAACTTGACCAGCTACGAGGGGCCCCTGGCCGCACCTCATGCCAAGCCCCAGCTCTCTTCCGTGGCCAAGGTGCAGTCGGGGGGTTGCCCGGCTGGTGGGTCACCCAAGCGAGTGATTGTGCAGGCCTCCACCAGCGAGCTGCTGAAATGCCTTGGTGAGTTCCTGTGTGGCCGCTGCTACCGCCTCAAGCACCTGTCGCCCACCGACCCCATCCTGTGGCTGCGCAGTGTGGACCGCTCACTGCTGCTGCAAGGGTGGCAGGACCAGGCCTTCGTCACGCCCGCCAATGTAGTGTTCGTCTACCTGCTGTGCCGCGATGTGATTGACGGTGACCTGGTGTCCACCGAGCACGAGCTGCAGGCCACGCTGCTCACCTGCCTCTACCTGTCCTACTCCTACATGGGCAACGAGATCTCCTACCCGCTCAAGCCCTTCCTGGTGGAGGCCGGCAAGGAGGCATTCTGGGACCGCTGCTTGCGCATCATCGACACCATGAGCGCCAAGATGCTGCGGATCAACGCCGACCCGCACTTCTTCACGCAGGTCTTCGCCGACCTCAAGAGCGAGGGTGGCAGTGAGGACTACAGCCGCACGCTGGACCGGTGA

Function

GO: NA

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002400 True 921 mRNA 0.62 1 13140667 13141587

Neighbor

gene id symbol gene type direction distance location
AMCG00002394 NA coding upstream 50284 13089416 ~ 13090383 (+)
AMCG00002387 cyhr1,LOC107591623,LOC107742848,LOC107696565,LOC107706189 coding upstream 55589 13071426 ~ 13085078 (+)
AMCG00002391 NA coding upstream 116558 13021567 ~ 13024109 (+)
AMCG00002386 NA coding upstream 444539 12638486 ~ 12696128 (+)
AMCG00002380 NA coding upstream 893678 12244723 ~ 12246989 (+)
AMCG00002401 NA coding downstream 49442 13191029 ~ 13194076 (+)
AMCG00002402 NA coding downstream 86940 13228527 ~ 13237405 (+)
AMCG00002408 NA coding downstream 130094 13271681 ~ 13304556 (+)
AMCG00002409 NA coding downstream 166410 13307997 ~ 13328399 (+)
AMCG00002406 NA coding downstream 227724 13369311 ~ 13373738 (+)
G122876 NA non-coding upstream 73032 13067265 ~ 13067635 (+)
G122868 NA non-coding upstream 88277 13052025 ~ 13052390 (+)
G122830 NA non-coding upstream 729526 12404942 ~ 12411141 (+)
G122829 NA non-coding upstream 767636 12372801 ~ 12373031 (+)
G122744 NA non-coding upstream 1009920 12129878 ~ 12130747 (+)
G122911 NA non-coding downstream 46362 13187949 ~ 13188278 (+)
G122914 NA non-coding downstream 47695 13189282 ~ 13189862 (+)
G122929 NA non-coding downstream 163110 13304697 ~ 13305599 (+)
G123039 NA non-coding downstream 404477 13546064 ~ 13546300 (+)
G123041 NA non-coding downstream 424827 13566414 ~ 13570811 (+)
AMCG00002393 NA other upstream 10970 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 69835 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 88696 13031759 ~ 13051971 (+)
G122746 NA other upstream 1000202 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1124583 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 1186045 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3816574 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3834701 16976288 ~ 16985906 (+)
G123807 NA other downstream 4773849 17915436 ~ 17984730 (+)
G123989 NA other downstream 5690427 18832014 ~ 18838531 (+)

Expression


Co-expression Network