AMCG00002500 (snrpd1,LOC105910057,LOC107655105,LOC107559756)


Basic Information

Item Value
gene id AMCG00002500
gene name snrpd1,LOC105910057,LOC107655105,LOC107559756
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16958161 ~ 16960082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002500
ACTTTGGTGGGGGATTTCTCTGCGTAATCTACTGCCAACATGAAACTCGTACGATTTTTGATGAAGCTGAGCCATGAAACGGTCACCATTGAGCTGAAGAATGGCACCCAGGTTCATGGCACAATTACAGGTGTGGATGTGTGTATGAACACTCACCTGAAGGCTGTGAAGATGACCTTGAAGAACAGGGAGCCCGTGCAGCTGGAGACCCTGAGCATCCGTGGGAACAACATCCGCTACTTCATCCTGCCCGACAGCCTGCCGCTCGACACCCTGCTGGTGGACATCGAGCCCAAAGTCAAGTCCAAAAAGAGAGAAGCAGTGGCGGGCCGTGGCcgggggagaggcagaggaagaggccggggcagaggaagaggaagaggaggaccCAGGAGATAATTCACTCTGCTGTGCC
>TU154987
TCGATCACTTCCTGGTCATTCACTGATTTAATGCCGGAGCGGCTCAGTCTTGCTGTGTCGTTTCCAGTGTAATTTTTTCCAAACTTTGGTGGGGGATTTCTCTGCGTAATCTACTGCCAACATGAAACTCGTACGATTTTTGATGAAGCTGAGCCATGAAACGGTCACCATTGAGCTGAAGAATGGCACCCAGGTTCATGGCACAATTACAGGTGTGGATGTGTGTATGAACACTCACCTGAAGGCTGTGAAGATGACCTTGAAGAACAGGGAGCCCGTGCAGCTGGAGACCCTGAGCATCCGTGGGAACAACATCCGCTACTTCATCCTGCCCGACAGCCTGCCGCTCGACACCCTGCTGGTGGACATCGAGCCCAAAGTCAAGTCCAAAAAGAGAGAAGCAGTGGCGGGCCGTGGCcgggggagaggcagaggaagaggccggggcagaggaagaggaagaggaggaccCAGGAGATAATTCACTCTGCTGTGCCATCGTGTCTCCTGCATATGTTTGTACAGGtttttttgaatttttttttttacttcacaggaaaatgtttttgacactgaggtgtaatttttttttttttttttttatatataa

Function

symbol description
snrpd1 Predicted to enable RNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of SMN-Sm protein complex; nucleus; and pICln-Sm protein complex. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide).

NR:

description
PREDICTED: small nuclear ribonucleoprotein Sm D1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0019013 viral nucleocapsid cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002500 False 415 mRNA 0.55 4 16958243 16959969
TU154987 True 610 TUCP 0.48 4 16958161 16960082

Neighbor

gene id symbol gene type direction distance location
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding upstream 1591 16937361 ~ 16956570 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding upstream 24643 16925317 ~ 16933518 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding upstream 43209 16906745 ~ 16914952 (+)
AMCG00002494 lars2 coding upstream 57249 16856507 ~ 16900912 (+)
AMCG00002497 NA coding upstream 133938 16821699 ~ 16824223 (+)
AMCG00002502 NA coding downstream 27020 16987102 ~ 16992955 (+)
AMCG00002501 NA coding downstream 42966 17003048 ~ 17016246 (+)
AMCG00002507 NA coding downstream 135654 17095736 ~ 17102119 (+)
AMCG00002506 sh3bp5 coding downstream 147317 17107399 ~ 17136520 (+)
AMCG00002513 NA coding downstream 244381 17204463 ~ 17248752 (+)
G123568 NA non-coding upstream 165362 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 303277 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 306197 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 468209 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 1163012 15794408 ~ 15795149 (+)
G123653 NA non-coding downstream 131893 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 177331 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 735778 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 966617 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 1090930 18051012 ~ 18052338 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2596625 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3828464 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3887329 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3906190 13031759 ~ 13051971 (+)
G122746 NA other upstream 4817696 12133786 ~ 12140465 (+)
AMCG00002496 NA other downstream 16206 16976288 ~ 16985906 (+)
G123807 NA other downstream 955354 17915436 ~ 17984730 (+)
G123989 NA other downstream 1871932 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2113611 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 2169985 19130067 ~ 19133567 (+)

Expression


Co-expression Network