AMCG00002497


Basic Information

Item Value
gene id AMCG00002497
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16821699 ~ 16824223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002497
CAGGATTTTGCTCACCTTACCACGCTCGGTTATCCCTTGCTTGTGATCTGGCTTAGCGTGTCAAGTGCAGTCTGGCACAGTGTCCAGATAAAACAGCTTCTTGGACTCCCTTGAACTGGATGGATTTATTGAGCAGAAGTTTTTGATTACAGTGTTTTTCCACATTCAGGGATAGAAAGAGAAGATAAATTAGAGAGCTCTGCCCCTGCGCTGCGCATTTCCAGGTCTAGCCATGGCGTTCACAGGAGTACGCGTGCTGCTCTGCCTCCTCTGCGTTGTTCATGCCTCGCTGCAGCAGCAGAGCCCCCCCAAGAAAAAACCTGCGAAGAAAGATGCAACTAGCTCTGCAGCCATCGATGAGATCAAGCAGCAGATTGAGGATATCCTGCAGGAGTTGAGTCTCCTGAAGGAACAGCAGGCCTTACAGACTGTGTGCCTGAAGGGAACCAAAATCCACGGCAAGTGCTTCCTGGCAGTGAACGAGAAGAAAAGTTATCACACGGCCAACGACGACTGCATCTCCAAGGGCGGCACGCTGAGCACGCCCCTCAACGGCGACGAGAACGACTCGCTCTACGACTACATGAGGAAGAGCATCGGCCAGGAGGCCCAGGTCTGGCTGGGCATCAACGACATGATGAGTGAGGGCTCCTGGAAAGACGTGACGGGAACCAACATCAAGTTCAAGAACTGGGAGACCGAAATCACCACCCAGCCCGACGGCAACCGCTCCCAGAACTGCGCCGTCCTCTCGGGCACTGCCAACGGGAAGTGGTTTGACGAGAACTGCCGCGCGGAGAAGCCCTTCATCTGCGAGTTCAACATTGTCTGAGTGTCCTCTCTGCGTCTTCCCCCTTCTAAAGGCACATGTATTGGGTTGatctgtttttgttgattttgtctTTTGAATTCTGGTGAATCCTCTCACTATTAAACCGCTGGTCAAAATGGTGATACAGATTGCACATTTCTATTCTGTTTCTTTAACAAACAATCAAATTCTTAAAATGCGTCTGTAAATACCATTAACATCTAGTAATGTTTTTCcccttgaaaataatattttgagtTGGATGAAGATGGCTGATATTACAGCACAtctaatacatatacaataaacatGGTTGCAACAATGTGCTGAAAATATGCCAAAGAGGATTAATAATGTAAGATTGTAAGAAAACTTATTTATGCCCTTCAGTAAGAACTTGCTTTAAAACAgatttctatttatattttgcattctctgtatttttcattttcctcatTTGTGgtgaaattaatatatacaagGTTAATTTCAGCAAGCTAGTCGCTGccggtttatttttgtaaccaaAAATGTCTAGCCTGATATAACCAAAAGCCAGAATATTAATCtgttaaattacttaataaatTTGTTAGAAAATGA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K17520 CLEC3B; C-type lectin domain family 3 member B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002497 True 1414 mRNA 0.45 3 16821699 16824223

Neighbor

gene id symbol gene type direction distance location
AMCG00002498 exosc7,LOC107693297 coding upstream 2111 16813461 ~ 16819588 (+)
AMCG00002489 NA coding upstream 31262 16779828 ~ 16790437 (+)
AMCG00002485 tmem42,LOC107394544,LOC103356608 coding upstream 46940 16769702 ~ 16774759 (+)
AMCG00002484 NA coding upstream 52177 16754096 ~ 16769522 (+)
AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding upstream 71103 16736684 ~ 16750596 (+)
AMCG00002494 lars2 coding downstream 32284 16856507 ~ 16900912 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding downstream 82522 16906745 ~ 16914952 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding downstream 101094 16925317 ~ 16933518 (+)
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding downstream 113138 16937361 ~ 16956570 (+)
AMCG00002502 NA coding downstream 162879 16987102 ~ 16992955 (+)
G123568 NA non-coding upstream 28900 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 166815 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 169735 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 331747 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 1026550 15794408 ~ 15795149 (+)
G123653 NA non-coding downstream 267752 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 313190 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 871637 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 1102476 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 1226789 18051012 ~ 18052338 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2460163 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3692002 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3750867 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3769728 13031759 ~ 13051971 (+)
G122746 NA other upstream 4681234 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 133938 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 152065 16976288 ~ 16985906 (+)
G123807 NA other downstream 1091213 17915436 ~ 17984730 (+)
G123989 NA other downstream 2007791 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2249470 19073693 ~ 19127947 (+)

Expression


Co-expression Network