AMCG00002498 (exosc7,LOC107693297)


Basic Information

Item Value
gene id AMCG00002498
gene name exosc7,LOC107693297
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16813461 ~ 16819588 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002498
GGCCACTCACCTTATCCTGGATGGCAGAAGTCCGTAAGCCACTGCCCCGGGATCCTGCTGTATTGTGAAGCCGCTGTGCGTGGCGTGCGTACAGTCAGTCACGCAAACACACGCCGAGCCCAGCCGCCACCACACCTCTGCGGAAACCGCACGCCTCTCTGCCGGCAGGTCAGCTACAACTACGATTGTGTGACGGATGATCTACGCGTAGATGGACGGGGGTGTGAAGATTACAGACACATGGAGATTGAAACTGATGTCGTTTCAAACACAGACGGGTCAGCGAGAGTTAAACTGGGGCACACAGACATTCTCGTGGGAGTGAAAGCTGAAATTGGCAAACCCAAGCCCATGGTTCCTGATGAAGGTTTTCTGGAGTTTTTTGTTGACTGCTCAGCAAACGCAACCCCGCAGTTTGAGGGGCGAGGAGGGGAGGACCTGGGCACAGAGATCAGTAACACCCTGTACAAGGTGTTCAATAACCGGCACAGTTTGGACCTCAGGACCCTGTGCATCAGCCCAAAGGAGCACTGTTGGGTCCTGTATGTAGATGTGCTGCTGCTGCAGTGCGATGGAAACCTGTTTGATGCCATCTCTATTGCGATCAAGGCAGCACTGTTTAATACACGAATCCCTAAAGTGCACATCTCGGAGGATGACGAAGGCACCAAGGAGATCGAGCTCTCGGACGATCCCTATGACTGCATGAGACTCAAAGTGGACAACGTGCCCTGTATTGTGACGCTGTGCAAGATCGGGCACAGACACGTGGTGGATGCCACGCTGCAGGAGAAGGCGTGCTGTATGGCCAGTGTGCTGATGGCAGTCACCAGCTCGGGCAACATCACCTGCGTGAGGAAGACTGGCGCTGGGAGCCTGGACCCAGAGAGCATCTTTGAAATGACAGAGACGGGGAAGCGGGTGGGAAAGGCCCTGCACCCCCCACTACTGGAGCTGCTGCAACAGGAAGAGAGTCTGGGGAAGACGAGGCCGAAAGTGGGCTTCCTGGGATGATGTGTGCAGCCTTATTTCACCTGTAAATGTGGACCTTTTCTAATAAACTGTTTTTGTGAA

Function

symbol description
exosc7 Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Orthologous to human EXOSC7 (exosome component 7).

NR:

description
PREDICTED: exosome complex component RRP42 isoform X1

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
K12589 RRP42, EXOSC7; exosome complex component RRP42

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002498 True 1074 mRNA 0.54 8 16813461 16819588

Neighbor

gene id symbol gene type direction distance location
AMCG00002489 NA coding upstream 23024 16779828 ~ 16790437 (+)
AMCG00002485 tmem42,LOC107394544,LOC103356608 coding upstream 38702 16769702 ~ 16774759 (+)
AMCG00002484 NA coding upstream 43939 16754096 ~ 16769522 (+)
AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding upstream 62865 16736684 ~ 16750596 (+)
AMCG00002482 LOC102294068,LOC100692553,LOC101478849 coding upstream 162055 16621519 ~ 16651406 (+)
AMCG00002497 NA coding downstream 2111 16821699 ~ 16824223 (+)
AMCG00002494 lars2 coding downstream 36919 16856507 ~ 16900912 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding downstream 87157 16906745 ~ 16914952 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding downstream 105729 16925317 ~ 16933518 (+)
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding downstream 117773 16937361 ~ 16956570 (+)
G123568 NA non-coding upstream 20662 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 158577 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 161497 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 323509 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 1018312 15794408 ~ 15795149 (+)
G123653 NA non-coding downstream 272387 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 317825 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 876272 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 1107111 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 1231424 18051012 ~ 18052338 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2451925 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3683764 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3742629 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3761490 13031759 ~ 13051971 (+)
G122746 NA other upstream 4672996 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 138573 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 156700 16976288 ~ 16985906 (+)
G123807 NA other downstream 1095848 17915436 ~ 17984730 (+)
G123989 NA other downstream 2012426 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2254105 19073693 ~ 19127947 (+)

Expression


Co-expression Network