AMCG00002485 (tmem42,LOC107394544,LOC103356608)


Basic Information

Item Value
gene id AMCG00002485
gene name tmem42,LOC107394544,LOC103356608
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16769702 ~ 16774759 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002485
TCGGTTGTGGACGTCATAACTCGGAAGTCTGGAGATTTAGCTGCGAAGGCACAGCGAGGGAAATGTGATGGACTTGAGGATTGAGGTTGCTTTAATTTCCGACCGCGAAGATGCTGTTCCCCGGGGTCATCTATGCATTGCTGGCGGGCTTCCTAGGAGCCGTCGCTTCTTCGTCGGCGAAACTGTCGCTGGGAGCCGATTACCTGAAAGGAGTGTGTGAAACGGGGCTCAAAACATGGGGAGGAGACGAGAGGAGTTTCAGGCAAGCGGACGACACGACAGCCTGCGACTGGcttCACATTCCCCTCCGCCTGCTGTGTGGGGGGCTGCTCTTCACCTGCAATGCTGTGATGTGGACCTTCTTTGCGAAAGCCCTCAGgtactcctcctcctctgccagAGCCACTGTGACCACCACCGCTTCCAACTTCATATCCTCAGCTTTCTTGGGGCAGCTAATCTTTGGGGAGACCCATGCTGTGCTGTGGTGGGTGGGCATCTCGCTCACTCTCTCTGGGCTCCTGGTTCTGCACAGAGCAGCCCCGCCACTTCCAGACCAGCCTGCGATCAAGAAGGATGAGTGAGGACGGTCCTGGGACGGCCTCCTCCTTGCGTGAACATATAACCGAATAAAGACAAGTAGCAAAGCAGAGTGGGGAAGCATTTGGAGAGTGGCTGCTGCAAAAGTCAACAGGAGATTTGATAAAATTGGTCCTTCTTTGCATTCACATATGCAACAGCCTAGGCTACCCACACCTGCTGATACGATTCTCAAGAAAATAGCATGCTAGTTTTGTTGTTCACTAGATGTCACGgatgtatgattttatttatttttatttttgttttacccgTGGTTGGTTATCGGTAATCCCCAGCTATTAGTTGTGTAAACTGGGTGGATCAAGTTTATAGaacggggggaaaaaaggacCGACTTTATAATCCTCTGTCAGCTTTTGATAAGACTGCCAGCTGCACTAATGGTGCTCAGTGAGGACATTGTTTTGCCTTTTCTCACGCATGCTGGGTCCTCAGATGGACTTAAATCCCAAAACACTGTGAAGGGGTGGGTGGGGCTCtgattctatatttatttttcacagaatacaatttcaaaaatgcacacataatCACAAAATGGGATTAACATTCACGTGTTGATTACGTTTTGCTTTACGtttttatatatgcatgcaatAAAAGGAAATGGAGAACTTTGCGTGATGGTTCGTGAAAAAGGATCCCTTTGTAACTGTCAGACCTGACTGTTCCTTCTTGAATTGACTGATACTATATCGTCTTTTCTGGTTTTCCACTGTAGATGGACAATGTTTGAGCACTGATCATATGTGACATACACTgcccatttaaaacaataatacatgacTGTTGGGTTATCATATTTGCACTGAACTACTGATTATAGTAATGCAAcaacctttattttttccctgcttTGGCAAATATTGCAATGACACAACTTTCAAATGATCCCAACTATATTTGGATCTGCAGTAGTTGGTAATAATCTCAGTGCTTGGACTGTCAGGACTGTAGCCTCAAAATTGTTCACtactttaataaataagttTCCTCTTTGTATAAATTGTAGAAAGGAAGCCTTCTGAAGATCCTGTAAAGTTCTCCCTTATAAAATTCCAGTTAATACACTGTGTGATAAGATTCTAGATACACCTGTTCTAGTTTTTGTGCTATTTAGACTATAGGAACTTGTACTTAAGTCTTCCAAAGTCAAAAACTTTGCATGTAGGTTGCTCAGACGCTGCAGGACTGGGTGACAGAACACAGAGACTGACAGGGTGTTTGATTAAAGCTTAGCATGTCATGGCGCTATGAAGGACCTGTTTTTAGTAGCAAACCCAAATCACACCTATGGCAGAAGTTCAAAAACTGAGCTGTTCACCAACAAAGGCCTCTTTCTGTGTTTAGTTTGGTCTGATTATCATCTCTCTCGGTACACATGGGACCTAAAATACAATGCTCCTAGTGAAGAATGACAGCAGATCAACaccctgcatttaaaaaaagaaatgaaaacatgtttgttaaatGGGTGTATGGTTTTATCCAAACTATGCCAACTTATGCCAAACCCTTTAATTCCTTCCTATGGAACTGTACATTTGTGATGTGTAAATACGTGTATTTTTTTACTCGAGtccttttgaaaacaaaccGTTTGAGTAAACATTTCCGTGTTTGACAAAGGCACAATCTGATAGATGCTTGAATAAATGGCTAATTCAGAACCGTCCGTGGGTGATGGATGTTGCCTGACAGTGAAACCCAGGCTGGGTGGACTTTTTTTGTAAGCATGGTAGCGACTTGCTTGGGTTATATAAGGTGGCATCTGTAACAGGACATTGAAGTAGCATGACAGAAATGAAACAATGTTGGTTTATATAATGTGTCTAGATAGCTTATTGGCTTTCTTTTTTGGAGTCTGACTAGTGCATTCACCATCCTGCATACACTCTGCCAAATAAGGAACATTCAGTGTCATAAATgtcataaaaagtaaaattgagCTTAaaatagtacagcacagtatgtTTTTCAGCAAAcctaaatagaaaaaaaacatatattaacaaaagtattcacactaAGCTCTACACCAaagcaaaactttgacctaccttaCCTGTAGATTGCAAACTTGTACCTCATCGCAGTTTAATGTTGACAGAAGCTGCTTTCTattacttcaaaataaaattgtgatggggtacaggtttgtaatttgcaatccGCAAGTAGGTTAAAGGTTTGATTTGGTATAGGCCCTAGTTCATATTTCCTCTTTTGTCTTTAGTTACAGCAGTAGGTATGGCCAGTCTGACCCATGTAGTCTTCTCCTTTTTATCTCTCAAACATGTGGCCCATGTATTGGTAATAATTCAAAGCTGTGATCCACCAGAGCTTGTTAGTGTGAAATATGGCATCATCGGTGCATTGAGCTTTGTGTACACAACACTTTGGCCGGTGTGCTTCTGATGCCTTATTCAGCTGTATTTGTGCCGTTGTCTTACATGATGATGCAGATTCCGCAAACATCACGATACGTCCTTGGCTTTAGTCTAGGGTGTTTAACACACCTCACACAGAGATATGTTTCTTGGTCTGTTGAGTCTAGAGTCTTGGCTGTACTAGCctccatttccatttgttttggtCATTGCAGCTGTTGCTTGTTGTCTACAGACCTTTTGTGATGCAGAAATAGATTGTATGATGGTCTGCAACTATTTATTCAACTAATATTGGCATCACTTGTGCTTTATGTCAATAGAGATCTAGCGATTGTTTGTGGAGCTGAATCATGACTACATTTGTCCATGCATAATATCACTTTTAGTAATAGAtgcttgtaaaataatattaattatatgaattatatatgatgtactatattttgttgttacatagtttttattttttaattgtaatctaAATGCTGACCTTGGACCTTACACTGCAAAGTTCTGCAGTACTTAATATCCTTgttcatataaataaacatgtgcaagTGTATTTGTAggtagatgtgtatatatatgtatagccatacatatatacacacaaacaatttgAGCTCTACAGACTCCACAGTAGGTAAATAGTTATTGTATTGTCCTCCAATCATGCGTTTGTTCTTGCAATTGTGAATGTTTActtatgttttcttatttgctTTGTGGGATACTTCCTTAtgtcttttaataaaacaataggtATATTTGACTAACA

Function

symbol description
tmem42 Predicted to be integral component of membrane.

NR:

description
PREDICTED: transmembrane protein 42-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002485 True 3774 mRNA 0.40 3 16769702 16774759

Neighbor

gene id symbol gene type direction distance location
AMCG00002484 NA coding upstream 180 16754096 ~ 16769522 (+)
AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding upstream 19106 16736684 ~ 16750596 (+)
AMCG00002482 LOC102294068,LOC100692553,LOC101478849 coding upstream 118296 16621519 ~ 16651406 (+)
AMCG00002480 NA coding upstream 199275 16535647 ~ 16570427 (+)
AMCG00002479 NA coding upstream 310491 16343098 ~ 16459211 (+)
AMCG00002489 NA coding downstream 5069 16779828 ~ 16790437 (+)
AMCG00002498 exosc7,LOC107693297 coding downstream 38702 16813461 ~ 16819588 (+)
AMCG00002497 NA coding downstream 46940 16821699 ~ 16824223 (+)
AMCG00002494 lars2 coding downstream 81748 16856507 ~ 16900912 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding downstream 131986 16906745 ~ 16914952 (+)
G123526 NA non-coding upstream 114818 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 117738 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 279750 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 974553 15794408 ~ 15795149 (+)
G123386 NA non-coding upstream 1079739 15689601 ~ 15689963 (+)
G123568 NA non-coding downstream 17341 16792100 ~ 16792799 (+)
G123653 NA non-coding downstream 317216 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 362654 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 921101 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 1151940 17926699 ~ 17940633 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2408166 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3640005 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3698870 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3717731 13031759 ~ 13051971 (+)
G122746 NA other upstream 4629237 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 183402 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 201529 16976288 ~ 16985906 (+)
G123807 NA other downstream 1140677 17915436 ~ 17984730 (+)
G123989 NA other downstream 2057255 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2298934 19073693 ~ 19127947 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010913 tmem42a coding NC_007127.7 CM002900.2 39237768 ~ 39241801 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_01199558_01199730 TMEM42 coding CI01000016 null 1199545 ~ 1199730 (-)