XLOC_010913 (tmem42a)


Basic Information

Item Value
gene id XLOC_010913
gene name tmem42a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39237768 ~ 39241801 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021350
CGATTGCCAATCCTGTTTGTTCTATTTCTGTGATTCGCAGTAGGaagtttcattattaatttatatgtcttaaaatgtaaaagatgGTGGTCAAATAATGATGTTAACGTAGCCCGCTCTTAGTGAGTCGGTAAGACCGAGCTGGAAAGATGTTGCCTGGCGTGTTTTATGCGCTAATGGCGGGGTTTTTGGCAGCTTTAGCTTCATCTTCTGCTAAGTTGTCACTTGGTGCTGATTATCTGAAAGATGTGTGTGAAACAGGACTGAAGATctggacagacagacagggaaACTCTGACGATGCTACAGCTTGTGACTGGTTGCATATACCTTTGCGGCTGCTGTGTGGAGGTCTTCTGTTTACCTGCAATGCTGTGATGTGGACCTTCTTCTCCAAAGCCCTCCGGCACTCGTCTTCCTCTGCCCGGGCCACTGTGACCACCACTGCCTCAAATTTTATATCCTCTGCTTTCCTTGGACATGTGATCTTCGGTGAAACTCATGCCACACTGTGGTGGGTTGGTATCATTTTGACCCTGACCGGGCTTTTTGTCTTGCATGGATCAACTCCTCAGGCTCCACAGGAAAACGTGGATAAGAAACATGAGTAGATAACACAGGGAGCAACAATGCCTTATCAAATGCTTGAAGTCAATCAACCAAGTCAGACAGCATGAAAGATAAGCACTTAAAGCTAATAAGGATTTTTTATGCAAGACTGCGGTACAAGTATCTTTTATAAGAGCATTGCGGTTCATTTATTAATGTGAGTTTTAGTCATGTGAATGTTGACACGATGCAAAGCTTCTAAATGTGTCTCACTTTGTGCCTGTAGTCAGTAGGTTACTTCAAACTGTGACAtgagatgtttatattttattcttatcattttttttttatttggtgggGAGTTGTTGTTGGTTAATAGACCAAATACTATAAAATACTTGTTTAAGCTTTGGAATTAAAACAATTGAAGAAAGATAATTGTGAATTTTATCTCATAATTTGGATTTCCATTTTAAAGTTGAGAGTTTATTTTGTAATTTCAAGACTGTAAAGATTGTAACATTGTGCAAGTTAATAATTAACACATCATAATTTTAGGTTACTGTGAGGAAAAACTGAACTCACAATTGCAAGAAATAAAAGTAGGGTtctaagaaaaaacaaaacaaaatccgtGAGATATAAATGCAGAAGTCTGCCTCTTTTTCTTGCGATTCATTTTTCTCTGAATTGTTTGTCTTGCAGTTTTCATCATTTTCTATGAAATAAGAAACAAAAGCAAACCTTGAATTGTGAAATAAAGTTtcaatattttttgtataatattcaattttttttgtataatccTGTGGCAGAAACAGGCTTCCATAGCTGTGAATCACAATTGAGAAATCTTTTACCTACAAGCTTGAGATTTTAAAAGTCTTCTGGAGTAAATCGATTTGAAtaaacattcaatcattcattca

Function

symbol description
tmem42a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM42 (transmembrane protein 42).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-402 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM42 (transmembrane protein 42).

Ensembl:

ensembl_id ENSDARG00000102717

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021350 True 1478 mRNA 0.37 3 39237768 39241801

Neighbor

gene id symbol gene type direction distance location
XLOC_010912 ebag9 coding downstream 42450 39185103 ~ 39195318 (-)
XLOC_010911 si:dkey-99n20.6 coding downstream 58789 39172842 ~ 39178979 (-)
XLOC_010910 gdf6a coding downstream 106102 39125589 ~ 39131666 (-)
XLOC_010909 BX296552.2 coding downstream 127837 39029883 ~ 39109931 (-)
XLOC_010908 NA coding downstream 212771 39000013 ~ 39024997 (-)
XLOC_010914 gpd1l coding upstream 6843 39248644 ~ 39267227 (-)
XLOC_010915 stt3b coding upstream 143682 39385483 ~ 39477746 (-)
XLOC_010916 tgfbr2b coding upstream 263362 39505163 ~ 39605661 (-)
XLOC_010917 NA coding upstream 371093 39612894 ~ 39625362 (-)
XLOC_010918 rbms3 coding upstream 401467 39643268 ~ 39900665 (-)
XLOC_010626 CR392024.2 misc downstream 18342593 20895112 ~ 20895175 (-)
XLOC_010907 NA non-coding downstream 287621 38948644 ~ 38950147 (-)
XLOC_010905 NA non-coding downstream 433616 38802405 ~ 38804152 (-)
XLOC_010904 CU855886.1 non-coding downstream 675124 38562527 ~ 38562644 (-)
XLOC_010919 CR626944.1 non-coding upstream 643333 39885134 ~ 39885251 (-)
XLOC_010920 CT025588.1 non-coding upstream 794910 40036711 ~ 40037796 (-)
XLOC_010923 NA non-coding upstream 1094680 40336481 ~ 40340518 (-)
XLOC_010927 BX324007.2 non-coding upstream 1279937 40521738 ~ 40584050 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_01199558_01199730 TMEM42 coding CI01000016 null 1199545 ~ 1199730 (-)
bowfin (Amia calva) AMCG00002485 tmem42,LOC107394544,LOC103356608 coding CM030136.1 CM030136.1 16769702 ~ 16774759 (+)