XLOC_010917


Basic Information

Item Value
gene id XLOC_010917
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39612894 ~ 39625362 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022217
gtttaaatttagtttaaattgcaaccacttaccttaaaaatgtagcaaatgcaattaatatttttttcagtgtagttttaGTGGCTTAACCAGTACTTATTTAAGGGGATTTACACCTATTTAAATTTGAATACTAACAGTTCTTGACCCCagtgagctacaaaaaaaaattaggtaaaattataattattaggtgtaacaatttataataggaatgaagacactttgagctttatcTAGAATATTTTGTGCTAAAAATATGAAAAGTTATACATTGTAAAGTAATGagaaagaaatatttgtttttccatatacagAGACATGAAATCAGTCATATAATAGCCTAGAAAAAATATTCCTTAAGGCCAAGTgtctcatgagtttatatttcaaatttgatgaagataACATGCTGAAATAAGATTTCTGTAAAGTTTTCCGAGACTATATCGGTGTCCTCTCCCTCACCGTCAGAGGCACTTTCTTAAAAATGACCTTCCTAAATGAAACCAGTAACAATTatttagtttacatttacatttcatgtatctttggaaagaagattttgggttttacaatgtttaaaatgctaaaaaaaaaatcataaacaaatatataatggATGAAATTAGACCTGGAGCAATACAGAAAAGTAAAAGGTCAAAAGCCACACATCTCCTGagtatatgttttgaatttgatggcAATCTCATGCAAAATTACATTTCTGGAATTGTTTTTCTGAGGCAACGTCCTGATGCTGGCTAAGAGGTTAAAGGTGATGTGTGTAAATTATTATACAGTAGATACACTAACATAATTTACTTACTCTTTAAATGACTTGGAATATCATAAACAGTCAAAGCTCGTCACGCCAGAAAATACCCCAAATCTGTAAACTGTCAATAGGTTTACGTAACTTTCTTATTTATGCTCCAGGCTGATATCCTCTCCGCTCATCTCTGTCTTTTTCCAGCACAGTTTTCCAGGAGCTTTAGTGGGAATATCGCAGTGTTTTTCCCCCTCTTGTTTCCATTCCCCTTTTCAAGATATGAGGAACTCCGCCAGAGAGGTTGCCATGGCGTCAGCGTCCACAACAGACAAAAACAGTGAAGATTCATCCAGAGCGGCACAGCGGGCACTGCAGAGACTCAATCAGCTGGAGACCCAACACTTCACTGTTTCTGCTCAGACTGTGCAGAAGGATGATCCCCTGTGAGTTCCTGGGTAAAAGCCAGACGGGTCACCTGTTTGTCCTCAAACAGACAGACACGAGGCCACAGAGAGTTCTCCATGCATGACTGATGCATCAAAACATGTCACCTTCTGCCACTTCCGTCAGCACAAGCGCCTGTCGGCAGCCCACCGCAAGCACTCTCTACAGGGCAATAAAAACACAAGAAGAATAAACTGATTTTAAAAGGCCAATTGTCTGGTGAAAGTAGGAAAGTGTGAAGTGAAGGAAGAAGAAGGAGGGAGGGGAAGAGGAGGCCGTGTGTGTTACATGTACATACCAGAGCGGTGAGATCGAGCGTGTTCAGGACAAGGATCATTTAGAAACACATACCACTCGCTTCGGCAAACACGCACAACGCACACTTTAGTCTGGTACAACATTACAATGTTTTTCAGCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022217 True 1635 lncRNA 0.38 2 39612894 39625362

Neighbor

gene id symbol gene type direction distance location
XLOC_010916 tgfbr2b coding downstream 7233 39505163 ~ 39605661 (-)
XLOC_010915 stt3b coding downstream 135148 39385483 ~ 39477746 (-)
XLOC_010914 gpd1l coding downstream 345667 39248644 ~ 39267227 (-)
XLOC_010913 tmem42a coding downstream 371093 39237768 ~ 39241801 (-)
XLOC_010912 ebag9 coding downstream 417576 39185103 ~ 39195318 (-)
XLOC_010918 rbms3 coding upstream 17906 39643268 ~ 39900665 (-)
XLOC_010919 CR626944.1 coding upstream 259772 39885134 ~ 39885251 (-)
XLOC_010920 CT025588.1 coding upstream 411349 40036711 ~ 40037796 (-)
XLOC_010921 si:dkey-29b11.3 coding upstream 415451 40040813 ~ 40043322 (-)
XLOC_010922 BX470182.3 coding upstream 512671 40138033 ~ 40155424 (-)
XLOC_010626 CR392024.2 misc downstream 18717719 20895112 ~ 20895175 (-)
XLOC_010909 BX296552.2 non-coding downstream 502963 39029883 ~ 39109931 (-)
XLOC_010908 NA non-coding downstream 587897 39000013 ~ 39024997 (-)
XLOC_010907 NA non-coding downstream 662747 38948644 ~ 38950147 (-)
XLOC_010905 NA non-coding downstream 808742 38802405 ~ 38804152 (-)
XLOC_010904 CU855886.1 non-coding downstream 1050250 38562527 ~ 38562644 (-)
XLOC_010923 NA non-coding upstream 711119 40336481 ~ 40340518 (-)
XLOC_010927 BX324007.2 non-coding upstream 896376 40521738 ~ 40584050 (-)
XLOC_010929 BX324007.1 non-coding upstream 1056566 40681928 ~ 40682703 (-)

Expression


Co-expression Network