AMCG00002506 (sh3bp5)


Basic Information

Item Value
gene id AMCG00002506
gene name sh3bp5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17107399 ~ 17136520 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002506
ATGATGGACAACATGGACAAGGGACCCAAATCAGACGAGGAGTTTGCATCGCCGGAGGAGGAAGAAGTTGATCCCAGAATCCAGGAAGCTCGCCAGAAATTCCGCTCTGTTCTGGTGGAGGCCACGGTGAAGTTGGATGAGCTGGTGAAGAAGATTGGAAAAGCAGTGGAAGACTCCAAACCATACTGGGAAGCTAGGAGGGTCGCCAGACAGGCTCAGTTGGAGGCACAGAAGGCCACTCAGGATTTCCAGAGGGCCACAGAAGTGCTGCGAGCGGCCAAGGAAACCATTGCGCTGGCCGAGCAGAGGCTGCTGGAGGATGACAAGAGACAGTTTGACTCAGCCTGGCAGGAAATGCTGAACCACGCCACACAGAGGGTAATGGAGGCGGAACAGACAAAGACCCGCAGCGAGCTGGTGCACAAGGAGACGGCGGCCAAGTACAACGCAGCCATGAGCCGCATGAAGCAGCTGGAGAAGAAGCTCAAGCGAACCATCAATAAGTCCAAGCCGTACTTTGAATTGAAGGCAAAATACTACCTACAGCTTGAGCAACTGAAGAAGAATGTGGATGAGCTGCAGGCCAAGCTGTCCCTGGCAAAGGGCGAATACAAGGCGGCCCTGAGGAACCTGGAAATGATTTCAGACGAGATCCACGAGAGGAGGCGCTCCACCGCCATGGGGCCACGAGGGAGGGGCGTGGGGGCCGAGGGTGACAGCGCCTGTGGGGATGAGCTCTCCAACTTCAAAATGGAGTCGGACGCCATCTCCATGACGTCGGAGGTGTTCGAGGATGATAACTGCAGCAGTGTTGTGTCTGAGGAGGACTCGGAGACCCAGTCCATGTGTAGCCTGAGCTCTGGGCCCACTAGTCCCCTGGAGCTGCCTAGCCCCTTCCCCTCAgcgtcctcctcctcttcctcctcctctccctcaccctcctcCCGGCCCAGCAGCCTGGACCTGCCCAGCCCCGTCTCCCTGTGCGACTTCGGCCTCATCTCTCCCGTGCTGGGGCCGCGCAGCGAGTGCAGCGGGGCGTCTTCTCCGGAGTGCGACCTCGAGCGAGGCGACCGAGCAGAAGGAGCCGAGGATGAGGTCGACAATGtgctcaaaaacaacaacaacaacaagacgACGACGAGCAGCACCGGCCTGGAGAACCGTTTCAGCCGGCTGGCGCTAAAGCGGGCAAAGACTGACAACCTGAAGAACGCCGAGCGCGAGCGCTTCAGCCGGGCCCCGCACCCCCCCACCGCCGCCACGCTGCTGGTGACCGGGATGTGAGACGTGAGTGCGTTCTTCACCCACAACCCCCTCCATGTGCCAAGGACCATTGTGCCAATAAGCTTTACTCCCGATAATCTCCGGTCTCGAGCAGACGGTATGAAGGACACCACCTATGAGTTACTGTAAATGACTTTTACTCTCGCAGTATGATTTTTGTTTCTCGTTGTTCAGTTGCAAACGTTTAAAATCTCCCTTCACTTGATAGCAAGGTCTGTTTTGCTTTAGTTGatctgttattaaatatttacacctCATACTTGCGTTGGAAGTACAACTTTGCATTGCTTAGAACACACGTGtgcaatgtgtatttaaatccTCAAATACTGACTGTTATTGCCGTCCCCCTGCCATGTCCTGCCTGTGTGCCTGTCCTTCCAATGACCTGTGCCGTTTGTGCGAGGACTTCTATTGTGTTCCTGTGGATTGCCTCTCAACCCCTTCTCTCCTTCAGGGTTGCTCTTGAAGAGTGTCACTCAATTGTCTAGGACTTTAACTCGCAGAGGACGCAACGAACtgcaaaaattaaatgaaaacagaaatgtttaaagGCTGAAAAAGTCTTAACTGTAGCTCTCATCTGTCCTGAAAATCTACCATGTTGTTTTCCCAGACAGATGGGCGAGTCGGAGCTCTGTTCACGCTCTGTTTAGTGCTCCCGGCACTGTGACATTACACTGAAGGGGCCTGTGACAATTAGACATTGATGGCAATGTAGTTGTGTTGGCCGGGTGTGTGAAATGTGAAGACACCAGCCACAGGGGAAGGAAATAAGCACCTAAAAGTGAGTCAGGAGTCAGATCAGATCAGGGTGGAGTCCAgactgcatttgtgtttttaaaagtattaataaaaatgataaaagcaCAAATTTGACTAGTTCATTTATTCTGCAATGCCAAATTTGGTCTTTAACCTCCTCTGATCTCCTTTTGAGTCGAAAACTACAGACTCACTGACACTCGATACAATGTCATGTGAAAGGTATAACTATTATATCCTTTTTTAGTTTGTATCAAATCAATTCCAAGAGGGACCACACACTTAAATTGCTTTTCCAGTCGAGAACCAAATGGTCCTATACAGAgtgtggaaataaaaaacaaaatctggcGAACATAATGGTTTAGCTATGGGATAGATGTTATCAGTTGCCTGAGCTGAACTTGGCGTAGTCTGCTCCTGTTAAAATGTCTGAAGAGAGACGGAGATGCAGCTGTTGATGGGGAAGTGCCCTAAACCAACACTGGCCTGTTTCATTACTGCTTTACTGCTCTGTAGCGCACGTCTCCCACAGAGGAGATAACACTGTGACCACTGGGGTATTAAACGAAATCAGAGCGAGATGGGAGGGGCGGCCCGACACACCAAACAGGGACCTGGCCGTTGTATCTTCTTGCTGCGGGAAATGCCACTTACcagttcctttgttttttttgtattccttccCGAAACACAAGCTTCTACAACATGAGCAATCCTccaaatactaaaaataaagcaatatgtgCAGATAGaattataaattaaagaaatgcattttttgtattgacGGACGATCGAAAATGTCTTCAGTATTGGTGAATCTTTTGTGGAAATCTAGTTGTACTGTGTTCCTGTCTGCACCTCCGCAGCCAGTTCCTTCGGGCCGGGGGCGAGGGGCGTCACAGCCAGTTTGCTGAAACTACAGTGTTTGAGAGAACCCGTCTGGAAGTGAAACTAAACCGACCTCTTGCTTCCATTCGGCTGACTTCATTGTCTAACTCCACTGCCGCTGTTGAACGTTTTAGTCCACCACTGGCCACTATAGGTATCTGGGCCTGAGTTACAGTACTTTACTTGGTAGCTGCATCTTTGCGCTGCCTtgcttttgaatatatatttttttcttgtgtgtgtattgtattgtaaagtaTATCAATCTATATTTCCACTGTGTCTCTTTCACTGTGTGTAGTCATGGCAGTAGGGGTGGCAGTGTCTCCTTGAATTCTATCTTTTCAAGTGTCTTGTAAGGTATCTCATGATGACTTGTGTATCTGTGTTAAGTTAAATAAACTGCTATTCACTGCATTAGAAA

Function

symbol description
sh3bp5 Enables guanyl-nucleotide exchange factor activity and protein kinase inhibitor activity. Acts upstream of or within intracellular signal transduction. Located in cytoplasmic vesicle membrane and nuclear body.

NR:

description
PREDICTED: SH3 domain-binding protein 5

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002506 True 3370 mRNA 0.49 8 17107399 17136520

Neighbor

gene id symbol gene type direction distance location
AMCG00002507 NA coding upstream 5280 17095736 ~ 17102119 (+)
AMCG00002501 NA coding upstream 91153 17003048 ~ 17016246 (+)
AMCG00002502 NA coding upstream 114444 16987102 ~ 16992955 (+)
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding upstream 150829 16937361 ~ 16956570 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding upstream 173881 16925317 ~ 16933518 (+)
AMCG00002513 NA coding downstream 67943 17204463 ~ 17248752 (+)
AMCG00002512 NA coding downstream 134061 17270581 ~ 17272452 (+)
AMCG00002517 NA coding downstream 148551 17285071 ~ 17291512 (+)
AMCG00002511 NA coding downstream 186115 17322635 ~ 17353428 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding downstream 253425 17389945 ~ 17415896 (+)
G123568 NA non-coding upstream 314600 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 452515 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 455435 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 617447 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 1312250 15794408 ~ 15795149 (+)
G123659 NA non-coding downstream 893 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 559340 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 790179 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 914492 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1368368 18504888 ~ 18509774 (+)
AMCG00002496 NA other upstream 121493 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 147317 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2745863 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3977702 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4036567 13044693 ~ 13070832 (+)
G123807 NA other downstream 778916 17915436 ~ 17984730 (+)
G123989 NA other downstream 1695494 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1937173 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1993547 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 3105328 20241848 ~ 20333030 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_02679833_02695963 SH3BP5B, SH3BP5 coding CI01000016 null 2678538 ~ 2695963 (-)