AMCG00002512


Basic Information

Item Value
gene id AMCG00002512
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17270581 ~ 17272452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002512
AGAAGACCAATTGCCCTGCATACCCCACAGAGCTAGTGCTCGCCTTCGATATGTCTGAGGACGTTTCATCACCAGTCTTTGAGAGAATGCGAAAGGTCGCCCTAAAGCTTTTGGAGGACATCAGCATCGCAGAAAGCAACTGTCCCACCGGAGCCCGGGTAGCGGTCCTGTCCTACAGCTCCACCACAAAGTATCTGATCCGCTTCTCGGACTATCACCGCAAGAAGCACCTGATAGAAGCAATAAAGAACATTCCCCATGAGAGGACGTCTAACCACCGCAACATCGGGGCAGCTATGAGATTTGTGGCAAGGAATGTGTTCAAGCGAACCCGCCAGGGCGTGCTGATGAGGAAGGTAGCCCTGTTCATCTCCAATGGGGCGTCTCAAGAGGCCACACCCATCACCACAGCTGTGATGGAGTTCAAGGCTCTGGACATCACCCCTGCGGTCATCGCATTCAAGGATGTTCCGAATGTCAAGCGTGCTTTTAGGGCTGTTGAAACAGAAAGTTTCTCAGTGACAGTAGTGGAACGACCACAGGATGAGCGATCGGAGATCCAGAGAGTTCTACATTGTATAATCTGCTATGATGTATGCAAGCCCTTGGCAGCATGTAGAAGAAACCACTCCGATTCCACTCCAGAGCAATTCGATGGAGACCTGGTGTTCATGGTCGACGGCTCACACAATATGCAGACCGATCATTATGATAGGGTTAAAGAGCTTTTGAGCTCTGTTCTGGATCAGATTGTCATAAGCAACAATCCAGGCACTCCAAAGACAGGGGCTAGGGTGGCTCTTGTGCAGCACAGTCCATTGAGCTATCCTTGGAGAGTCCAGGAACCAATCAAGCTTGAGTTTGACCTCCTGCAATATGCAAACAGGAAATTAATGAAAAGGCATATTCAAGAGAACATGCAACAACCAGGGGGCCCCTCCACCATTGGCCAGGCTGTCGAGTGGGTGATCAACAATATCCTGCTCAAAGCCTCAAAGCAAAGGAGACCGCGGGTCATTTTTACAGTTATTGGAGGGGAGACAAGTCATTGGGACCAATCCAAACTGAACCACATATCACTACTAGCCAAGTGTCAGGGTATTGTTCTTTTCACCCTTTCAACAGGAAATGGGTTCAATGACACACAATTGGAAGAGACTGCAAGTTTTCCCCTAGAACAACATCTGCTATTCATGGATCAAGTCAgacacagtgaaataaaatatgcacAACAGTTCACAAAAGCATTCTTCAGAGCTCTGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002512 True 1265 mRNA 0.49 3 17270581 17272452

Neighbor

gene id symbol gene type direction distance location
AMCG00002513 NA coding upstream 21829 17204463 ~ 17248752 (+)
AMCG00002506 sh3bp5 coding upstream 134061 17107399 ~ 17136520 (+)
AMCG00002507 NA coding upstream 168462 17095736 ~ 17102119 (+)
AMCG00002501 NA coding upstream 254335 17003048 ~ 17016246 (+)
AMCG00002502 NA coding upstream 277626 16987102 ~ 16992955 (+)
AMCG00002517 NA coding downstream 12619 17285071 ~ 17291512 (+)
AMCG00002511 NA coding downstream 50183 17322635 ~ 17353428 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding downstream 117493 17389945 ~ 17415896 (+)
AMCG00002529 NA coding downstream 173468 17445920 ~ 17471292 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding downstream 380023 17652475 ~ 17661173 (+)
G123653 NA non-coding upstream 122245 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 129146 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 477782 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 615697 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 618617 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 423408 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 654247 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 778560 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1232436 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 1282033 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 284675 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 310499 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2909045 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4140884 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4199749 13044693 ~ 13070832 (+)
G123807 NA other downstream 642984 17915436 ~ 17984730 (+)
G123989 NA other downstream 1559562 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1801241 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1857615 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2969396 20241848 ~ 20333030 (+)

Expression


Co-expression Network