AMCG00002528 (atp2c1,LOC107592020,LOC107668304,LOC103369286)


Basic Information

Item Value
gene id AMCG00002528
gene name atp2c1,LOC107592020,LOC107668304,LOC103369286
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17389945 ~ 17415896 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002528
ATGGTCTTTTCAGAAGGGGTAAAGGAAGTTATCTACACTGTGTGGCAGCTTGTCGAACATCTATCCAAGTGTGAAGATGAGACAATGGTTCCGGTACTAGCATCAAAAAAGGCCAGTGAGCTACCGGTGAATGAAGTAGCTTGCATTTTACAGGCTGACTTGCAGTATGGTTTGAATCACGGGGAGGTGACACGTCGTCGTGCATACCATGGCTGGAATGAGTTTGACATCAGTGAAGAAGAACCGTTatggaagaaatacatttctcagtttaaaaaccCCCTGATAATGCTTCTGCTGGCCTCCGCAGTCATCAGTGTGTTAATGCACCAGTTTGACGATGCTGTCAGCATCACTGTGGCCATCATCATTGTTGTTACAGTTGCCTTTGTACAGGAGTACCGTTCTGAAAAGTCCCTTGAAGAACTGGGCAAGTTAGTGCCTCCTGAGTGCCACTGTGTACGGGAAGGAAACCTGGAGCACCTGCTGGCCAGAGAGCTGGTTCCTGGAGACACAGTCTGCTTGTCAGTGGGAGAGAGGGTTCCTGCTGACCTGCGTCTCTTTGAGGGCATTGTTATTGGAACTGGAGAAAATTCAGAATTTGGTGAAGTTTTCAAAATGATGCAAGCTGAAGAAGCTCCAAAAACACCTTTGCAAAAAAGCATGGATCTGTTAGGCAAACAGCTCTCCCTCTATTCATTTGGGATTATAGGGGTCATTATGCTGGTTGGTTGGCTACAAGGAAAGCATATTCTTGATATGTTTACTATTGGAGTTAGCCTTGCAGTCGCTGCTATTCCTGAAGGGCTGCCCATCGTGGTGACGGTGACACTGGCTCTGGGTGTGATGAGAATGGTGAAGAAGAGAGCGATTGTGAAAAAGCTCCCAATTGTGGAAACCCTGGGCTGCTGCAATGTAATTTGCTCAGACAAGACCGGAACCCTGACGAAGAACGAGATGACAGTCACTCATTTATTCACCTCTGATGGACTCCATGCTGAGGTTACGGGAGTCGGGTACAATAATGCTGGAGAAGTTATACTAGATGGAGAAGTGATCCATGGATTTTCCAATTCGTCCATAAGTAAAATAGTAGAAGCCGGATGTGTTTGCAATGATGCCGTCATTAGAAATAACACTCTAATGGGCCGCCCGACGGAAGGAGCTTTGATTGCTCTCGCCATGAAGATGGGCTTAGAAAGTGTTCAGCAGGAGTATATCAGACGGGAGGAGCACCCGTTCACCTCTGAACAGAAGTGGATGGCTGTCAAGTGTGTTCATCGGACTCAGCAGGACAAACCTGGGGTTTATTTCATGAAAGGTGCCTATGAACTCCTAATACGATGCTGTACTACTTATAACAGCAAGGGCCTGGCGCTGCCCATAACCCAGCAGCAGAGGGAGCTCTACCAGCAGCAGAAGATGTACATGGGCACCGCAGGACTGAGAGTGCTGGCCTTCGCTTCTGGCTCTGAGATGGGCCAGCTGACATTCCTGGGGTTGGTGGGAATTATCGACCCTCCCAGGACAGGCGTGAAAGAGGCGGTGGGGGCGCTCATCAGCTCGGGAGTGGCCATCAAGATGATCACTGGAGATTCCCAGGAAACGGCCGTTTCCATTGCCAGCCGATTGGGTTTGTACTCCAAAGggtctcagtctctctctgggGAAGAGGCCGACCAAATGGATATTCAGCAGCTGTCTCGCGTAGTTCCTAGGATAGCAGTGTTCTACAGAGCGAGCCCCAGACACAAACTAAAGATTGTGAAGTCTTTGCAGAACATTGGGGCTGTGGTGGCCATGACAGGAGATGGAGTCAATGATGCCGTGGCCCTCAAGGCAGCCGATATAGGAGTCGCAATGGGACAGACCGGCACCGATGTTTGCAAGGAAGCAGCCGATATGATTCTAGTGGATGATGACTTCCAGACAATCATGTCTGCCATTGAAGAAGGAAAAGGAATTTACAATAACATCAAGAACTTTGTACGATTTCAGCTCAGCACgaGTATAGCAGCACTGACTTTAATTTCCTTGGCTACGCTAATGAATTTTCCTAATCCCTTAAACGCAATGCAGATTTTGTGGATTAATATTATAATGGATGGACCTCCAGCTCAAAGTTTGGGAGTAGAACCCGTTGATAAAGATGTGATCCGAAAGCCTCCGAGAAATGTGAAAGACAGCATTATCACCCGGAGTCTGATTGTAAAGATTTTAGTGTCCTCATTCATCATTGTCTGTGGAACTCTCTTCGTCTTCTGGAGAGAGCTGCGGGACAACGTGATCACCCCCAGGGACACAACAATGACCTTCACCTGCTTTGTGTTCTTTGACATGTTCAACGCACTGAGCTCCAGGTCACAGACCAGATTTGTCCATGAGATGGGCTTGTGCAGTAACAAGATGTTTTGTTATGCCGTTCTTGGATCCATAATGGGACAGCTGCTTGTCATTTACTTCCCACCACTACAGAAAGTGTTCCAGACGGAGAGCCTCAGCATATTTGatttgattttcttaattGGACTAACCTCCTCAGTACTCTTTGTGTCTGAGGCCATAAAGAAGATCGAGAGAGGTCGAGAGCGGAATCAGAAACCTGAAGCCTTTTTCCATGAAGTATGATGCATATTGTGTCTGTGGTAAAGGAACAGGCGGCGTCTGTGAAGTAAATGGACAGGAAGTTGAGTCTAGAGGGTTTGGCAGCAAGCTCTTTTTCCATTGAATCAgtttatttaactttgtttgtggttttccaACCATGAATCTACAGGGAAGGCACTAGCTACACTACAAAAACTGTAGTGGCGACACATTTCCCGTTAAGATTTTGTCTGCTGCTTCAAGTTAAAACTGGACCTTTCAGCGAATCTGAAAGAccttatttataacattatgtTCACGTAGCCAGTTgagattttgattaatttttaaggtttttattCTTTCAGCACAGgtgttggattttgttttgtggaacAGTATGGATGTTACTTTCAGGCATTCCAGTTGATCTTGCTAAATGGATCAAGGTCCCCATATTGTCActatagtgtttatttattttacaaaacagggaggaaaaaataaaaaataaactggtgGATTTCTTTTATGCTACCgttttgtatacatattttggaGGAGGTGACCACtattaaatcatgtattttgtgGATGACGAGCTTTTATAAAATGGAACATCATCTGTGTGTCTTTATATCGAGTAAGTGTGATCAAGTATGATTTGGTGTTGGATGAAATCGGTGTATACAAGTATTCTTGCTGCATGGCCAAGTGCTGGATTTGTACGTGTACCAGATtctgttcgtttttttttttttttttttaagggtagAGCAAAGTAAATTCATCTGGTATTGAAAGCTCAGAaattatcaatttctcagtcactttaattaattgatatcaGCTTTGTTCTGTTTGGTGATTACTACCAAGCCTTGTATTTTAAGTCGAAGCGAGGAACTTCAGCccgtatttaattttttttttaatccttaaGAGTTGAAAAAGACGAATGAACAGATGATAGAGAAGGTTCTCGAATGTACATAACTTTAATGCTGTAACACCATTAATACCTTTTATACCCATCTGATCGATGTCCAATTGCACTgttgatatacatttttatatagtttctCTCTTGgcaaaggacatttttttttaatatatattgcagatgattttaattttgctatATTCTTTGACATAATGGGCGttaaatttatttaaagtttaaatgagTGAAGTGGACATGTCGTGTTCCCCTGGAAATTAAAAAGCCTGAAAATTTTTTGGTACAAAACCTGCTGTTGTCTAGCAAAAGCAGTTGTCTTTGTGTTTGGACAGCTCCTggtccaactttttttttttctttctttttctttcaaatgttgtccaaatatatacatttttctcccCTGCTGTTTTCAGTTCCATTCACACATGTCAAACAAGTACAGCCTTCATTTGTGCTGCTTTGCTTTTCAAAGAGGTAAAACCAATGAGGTCTGACTGTGCTGTTGTTTCTCGTGTGCACAGCTGACACCATTATTCTGTTGACACCGTTTTAAAATAATCCTG

Function

symbol description
atp2c1 Predicted to enable ABC-type manganese transporter activity and P-type calcium transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be active in Golgi membrane; endoplasmic reticulum; and plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Hailey-Hailey disease. Orthologous to human ATP2C1 (ATPase secretory pathway Ca2+ transporting 1).

NR:

description
PREDICTED: calcium-transporting ATPase type 2C member 1 isoform X1

GO: NA

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002528 True 4113 mRNA 0.43 26 17389945 17415896

Neighbor

gene id symbol gene type direction distance location
AMCG00002511 NA coding upstream 36517 17322635 ~ 17353428 (+)
AMCG00002517 NA coding upstream 98433 17285071 ~ 17291512 (+)
AMCG00002512 NA coding upstream 117493 17270581 ~ 17272452 (+)
AMCG00002513 NA coding upstream 141193 17204463 ~ 17248752 (+)
AMCG00002506 sh3bp5 coding upstream 253425 17107399 ~ 17136520 (+)
AMCG00002529 NA coding downstream 30024 17445920 ~ 17471292 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding downstream 236579 17652475 ~ 17661173 (+)
AMCG00002525 NA coding downstream 245983 17661879 ~ 17675110 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding downstream 390839 17806735 ~ 17811727 (+)
AMCG00002535 LOC107751889,LOC107704104 coding downstream 582150 17998046 ~ 18050916 (+)
G123653 NA non-coding upstream 241609 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 248510 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 597146 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 735061 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 737981 16651542 ~ 16651964 (+)
G123797 NA non-coding downstream 279964 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 510803 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 635116 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1088992 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 1138589 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 404039 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 429863 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3028409 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4260248 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4319113 13044693 ~ 13070832 (+)
G123807 NA other downstream 499540 17915436 ~ 17984730 (+)
G123989 NA other downstream 1416118 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1657797 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1714171 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2825952 20241848 ~ 20333030 (+)

Expression


Co-expression Network