AMCG00002535 (LOC107751889,LOC107704104)


Basic Information

Item Value
gene id AMCG00002535
gene name LOC107751889,LOC107704104
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17998046 ~ 18050916 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002535
ATGAAGACATTCCTAAAGACCAGTTCCTCTTATCAGAGTTGTCGGCTCCACTCTGTGCGCTTCAATACCGTGTACACATGCGCAGTTGTGTCCGGGCTGGCGACACGCTGGCGAGATCCAGGGCTGCCCCACGGCCTGCCTGCCTCCATCTCCGGCACTGGCCCCGCTCATGGCACATTGGGCTTCCCTGTGAAAGCTGCCAAGCTGGACGCCACAGCTTTGCACCACAACACCTCGGCCACCACCCTGCCCCCTTCTGCTCCAAGCATTGAGCCACTGCCAGCCTGCGGACCGGGCTCCGGGGAAGAGCAGTATGTAAGTGAGGCAGCCCTACCGGAGGAAGCACCAGACGACCGGGTTTACAGAGATGCGGGAACCATTACTGATGTGTGTAACAGTACTGATCTTCCAGAAGTTGAAATCATCAGTCTACTGGAAGAGCAGCTGCCCCACTACAAGCTAAGAGCTGACACTATCTACGGGTATGACCACGACGACTGGCTGCACACCCCGCTCATTTCTCCCGATGCCAATATCGACCTCACCACTGAACAAATAGAGGAGACCTTAAAGTACTTCCTTCTATGTGCTGAAAGAGTGGGCCAGATGACTAAGACATACAATGACATAGATGCTGTTACACGTTTGCTTGAAGAGAAAGAGCGCGATCTGGAATTAGCCGCGAGGATCGGTCAGTCactgctgaagaaaaacaaaaccctcaCAGAGAGAAACGAATACCTCGAGGAGCAAGTAGAGCACATTCGGGAGGAGAAGAAACTCAAAGACCTAGAAGAGGAAAATATCGTCCTCAGATCCGAGGCTTGTCATTTGAAAACCGAAACTATCACCTACGAGGAGAAAGAGCAACAGCTGGTGAACGACTGTGTGAAGGAGCTTAGAGATGCAAATATACAAATCTCCAGCATTGCTGAAGAGCTGGCCAAGAAGACCGAAGATGCCGCTCGCCAGCAAGAGGAGATCACCCACCTGCTGTCTCAGATTGTCGATCTGCAGAAAAAATCGAAATCGTTACGAGAGCTGGAAGACAAGTATGCAGAGTGCATGGAGATGCTTCATGAGGCGCAGGAAGAGTTGAagaatctgcgcaacaagaccATGCCCAACAGCACTCCACGCCGTTTCCACTCACTTGGGCTCTTCCCTTTGGACTCCTTGGCAGCTGAGATTGAGGGCACCATGCGCAAGGAGCTGCAAATGGAAGACCCCGAAGTGGAAGAGCACAAGCTGCATCCCAAGCGCGTGTTCGAGACAGTGAAGAACGTCAACCAGACAGTGAAGCAGAGGTCCCTGGCTCCCTCTCCCATGAACATCCCGGGCTCCAACCAGTCCTCATCCCTCAACTCGGCTCTCTCCAGCTGCATGAGCACGCCCCGCTCCAGCCTCTACGGGGGTGACATCAGCAACATCGTCATCGACAACAGGACCAACAGCATCATCCTGGAGACCGAGTCCCCAGAGGGCAGTGTGGACGACAGCAACAAGAAGCCAGGCACTCCGGGGACGCCTGGCTCCCATGACCTGGAGATGGCCCTGCGCCGGCTGTCCCTGCGCCGCGAGAACTACCTGAGCGAGCGGCGCTTCTTCGAGGAGGACCGCGAGAGGAAGCTGCGAGACCTGGCCGAGAAGGGCGAGATCTACAGCGGCAGCCGCACGCCCACCGACAGCATCATGTCCCTGGGCACGCACCACTCCGGCCTGTCGTACTTCTCCTTCAGCAGCCGCTCCTACCTGCCCGAGAAGCTGCAGATCGTCAAGCCCCTCGAAGGTGACCGCAAAGGGCCCCGGCCCCTCGCCCTCCTCCTCTTTGACTCCATCTGGTCCCTCATGCACCACAAGTCTGGCTCTGCCACTCTGCACCACTGGCAGCAGCTGGCTCAGCCCAATCTGGGAGGGATCTTGGACTCCAGGCCCGGGGTGGTTACCAAAGGCTTCAGGCCGCTGGAGTTGGACCTGGAAGAGGTCTACCAGTTCACAGACTTTGAGGAGGACGAGCCAGGTGACCTTTCTTTCCAGAGCCTTTCTACCTCCACCCCCGCTCATCCTCGCAGCGAGGCCTCAGGTGAGAGGTCACAAGGGGAACAAGTAACTGTCACAGAGAGCGGCACTTTCCCCagccagccccagccccagccccagcccacGGCCATGGAGACCCCGGAGCAGAAGGCTGCCGGTGATGAGGTGTCTGTTCACTACCCTGGCAAGTGTATGTCACACACCAACTCCACCTACACCTTCACCACCTGCCGCATCCTGCACCCGTCCGACGAGCTCACTCGAGTCACCCCAAGCCTTAACACGGGTCCCATGTCAGCCTGCGTCAGCATGAGTAGCCTGAAGTCCACTCCAGTGGCTACCCCCTGTACCCCTCGCCGCCTCAGCCTGGCAGAGTCTTTCACCAACATGCGCGATTCCACCAAGACCATGAGCACCTCCCTGGGGCTGGTCAGACTCCTGCAGGAAAGGGGCATCTCAGCCGCCGTCTACAACCCGCAGAGCTGGGACCGGGCGGACAGCTGCGACGGCCCGCTCCTCTGCACCTCCGCCTCCCGAGGCCTGGAGACCCTGCCCTCCACTCCTCCCAACTCCCCCACCacccagcagcagcaacagcagcagcagcagcagcagcagcagcagcagacccCCAGTGCCCCCTTTGAGTTCAAGAGCTCCAGCCCTCCATATGACAACTTCCTGGCCTCGAAGCCCGCCAGCTCCATTCTGAAAGAGGTGCGGGCCGAGGCCAAGAGCATCTGCAACAGTGAGAGCCAAACAGACGTCAGCATGTACAACCTCAACCTGGTGGACAAGCTCAAGAGGTTCGGCGTTGCCAAGGTGGTCAGCCCTGGGGCCACCGGGCACACTGGGATGGCCACTCCTCTCCTCAGCGGGACTCGCCGATCGAAGCCCCCATTTGAACCCACGGGCCTGGTGAGGGAGGGGCTGCACCTAGGCTGTCCGGTGGTGACCAGCGCCATAGGGGGTTTGCCACTGACCTCTGGGATCCGGCGCAATCGCAGCTACCCAGCCATGGTGGGGGCCAGCATGCAGATGAAGGGGCCCGGGCCCCAGACTTCAGACATGCTGCTGGGACCCAAGCTTCCCAAACAGACTAGTCTCAAATAACAGACCCACGTGTCACCTTTTCTATATTATGttttagacatttttgttttttaagcaatgacgtatttatcattttattcaAGTGTTTGACAAATCAACTCTGTGCCTGTAAGAAACAGAAAATCTAGACTGTGTACAGCTTCTTTTTTGTATATAGAGCTCTTACTTTCTCTCtctactccacactgcttttTCTCTAAATCTTACATGTGTACCAAGGTGTATTCTGACTTGTTTATGCCCATGCtgttaaaaagtattttgaggTGCTCTGGAGGTGTGTAAGACAATGTAGCGCATTTCGTGATAGATTTGAGACAAAAAGACTCGGATATTGCTCTGAAAAAGCACTTTTACTTTAAGGCTAGGATGAATCAAACTGTGCCCCCAtttctgtttgctttgctttatctCAGAAAGCTCTCGTGCGTCTCATCTCTGCTGGACCTAGCATCACTGTGCActgacaatttaaaacaaactaaatacataGAAGTAGCAcc

Function

NR:

description
PREDICTED: trafficking kinesin-binding protein 1-like isoform X1

GO: NA

KEGG:

id description
K15369 TRAK1; trafficking kinesin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002535 True 3656 mRNA 0.56 17 17998046 18050916

Neighbor

gene id symbol gene type direction distance location
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 186319 17806735 ~ 17811727 (+)
AMCG00002525 NA coding upstream 322936 17661879 ~ 17675110 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding upstream 336873 17652475 ~ 17661173 (+)
AMCG00002529 NA coding upstream 526754 17445920 ~ 17471292 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding upstream 582150 17389945 ~ 17415896 (+)
AMCG00002534 cnot10 coding downstream 94296 18145212 ~ 18161564 (+)
AMCG00002540 LOC106606077 coding downstream 286840 18337756 ~ 18346198 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding downstream 406135 18457051 ~ 18458790 (+)
AMCG00002553 NA coding downstream 748944 18799860 ~ 18810379 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 1316400 19367316 ~ 19385301 (+)
G123808 NA non-coding upstream 57413 17926699 ~ 17940633 (+)
G123797 NA non-coding upstream 237851 17695860 ~ 17760195 (+)
G123653 NA non-coding upstream 849710 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 856611 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 1205247 16792100 ~ 16792799 (+)
G123833 NA non-coding downstream 96 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 453972 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 503569 18554485 ~ 18556562 (+)
G123950 NA non-coding downstream 533253 18584169 ~ 18586027 (+)
G123993 NA non-coding downstream 793452 18844368 ~ 18861644 (+)
G123807 NA other upstream 13316 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1012140 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1037964 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3636510 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4868349 13125378 ~ 13129697 (+)
G123989 NA other downstream 781098 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1022777 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1079151 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2190932 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4936629 22987545 ~ 22990164 (+)

Expression


Co-expression Network