AMCG00002534 (cnot10)


Basic Information

Item Value
gene id AMCG00002534
gene name cnot10
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18145212 ~ 18161564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002534
atgacagAACAAGGAACTGAGCCAAAGCACGAGAACAATTCATCCTCTTCTGGAATTTCAGATCAGGAAAAGGAACTAGCAGTCAATGCTTTTCAAGCTTTCTCGTCTGGAAATTATGATGACTCTCTGAAGCACCTTGACAATCTGCAAGAGCTGAACAAGGATGACTACAAGATTGCTATGAACAAGGCCATCGCTGAATTTTACAAAAGCAGTCAGACCACAACAGACACCTTAAAGCAAACACTTGCTGCTATGAAAAACCAGgTTCATGCTGCAGTAGAAGAAATGGATGGCCTGGATGATGTTGAAAACAGCCTTCTTTACTACAATCAAGCCATTATACACTACCACATGCGGCAGTACTCTGAAGCGATTGCAATTGGAGAAAAGCTTTATCAGTTTCTGGAACCTTTTGAAGAGAAGTTTGCTCAGGCCGTTTGCTTCTTGCTGGTGGACCTGTATCTACTGACATTCCAGCCAGAAAAAGCTCTGCATCTGCTTGCTGTCCTGGAGAAACTTGCAGTCCAAGGAAACAACAAGAATGGCAAAGCTGAGtaTAAAGTAAGAGCctatattcaaatgaaatccTTGAAGGCCTGTAAAAGGGAGATCAAGTCGGTCATGAACACAGCTGGAAATTCTGCCCCCTCCCTTTTCCTCAAGAGTAATTTTGAATATCTGAGGGGTAACTACCGGAAAGCAGTCAAACTTTTAAACAGCTCCAACATCGCAGAACACCCTGGAGTTATGAAAACTgGTGAATGTGTCCGTTGTATGTTTTGGAACAATCTTGGCTGCATACATTTTGCAATGGGAAAGCATAATCTTGGAATTTTCTACTTCAAAAAGGCCCTGCAGGAAAATGATCACACATGTGCACAGTTAGCTTTGAACAGCAATGGGCAAGCTAAGAAGTTATCTGGCATTCCTATGTGTACCCTTCTCGCAAACAAACGCTACGAGCTGCTGTACAACTGCGGGATCCAGCTGTTGCACATAGGGAGGCCTCTGGCAGCCTTTGAGTGTCTGATTGAAGCTGTCCAGGTGTACCACTCAAACCCTCGATTGTGGCTCAGACTGGCAGAGTGCTGCATAGCGGCCAACAAGGGGAATTCAGAACAAGAGACCAAGGGCCTTCCAAGCAAAAAGGGCATTGTACAGTCGATTGTTGGGCAAGGGTATCACCGCAAGATCATTCTTGCTTCACAGTCTACACAGAATGCTGTTTACAGCGATGGTCAGTCTGCAGCAATTCCTGTGGCCAGTATGGAGTTTGCAGCGATTTGCCTGAGGAACGCTCTGCTTCTCTTACCTGAACACCAACAGGAAGTGAAGTCAGAGAATGGCTCTAAGAGTTCCAGCCAGTCAGGAAGTGTGGAGAGCAGCAGTGAGAGCATTGAAGCGTGCAGTAAAGGCCAGGAAGGAGACAAGTTCATTCCGGCTGCTCCTTCCTCCCCTTTGAGAAAACAAGAGCTTGAAAACCTCAGGTGCTCCATCCTGGCCTGCAGTGCGTACGTCGCTCTGGCGCTGGGCGATAACCTGATGGCGCTCAATCATGCCGAGAAACTTCTGCAGCAGGCCAAGTTGTCAGGATCCCTGAaATTCCTGGGCCACTTGTATGCGGCCGAGGCGCTCATCTCCTTGGACAGGATCTCGGACGCTATCGCTCACTTGAACCCTGAAAATGTGACTGACGTGTCTCTGGGGATCTCTTCAAACGAGCAGGATCAAGGGTCTGACAAAGGGGAAAACGAGCCAGTAGAATCCTCAGGAAAACAGACTCCGCTTTGTTACCCCAATTCTGTTAACTCAGCCAGAGCAATGATGCTGTTCAATTTGGGCAGCGCTTACTGTCTGAGAAGTGAATACGAGAAAGCCCGTAAATGTCTCCATCAGGCCGCATCCATGGTTCACACAAAGGAGATCCCTCCAGAAGCTATACTCCTGGCTGTGTACCTTGAGCTACAGAATGGAAACACACAGCTGGCCCTGCAGATCATTAAGAGGAACCAACTCCTTCCCTCGGTTAAGACCCCGTCGCCCGACGTGCGGAAGAAGCCGGCCACCTTTCAGCCCGTCCAGCCCATCCAGCCCATCCAGATGCCAGCCTTCACTACAGTCCAGCGCAAGTGAGAAGACACCGCCCAGCAGTCTGCCCTGCTCGTAAACAAGCCAATTTGGTTGAAATTATTCATCGCCAGAACCTTCTTCCCCAAACTTTAAATTATAACAACCCATCCCATTCTGAATAATTGTCATTTACGTTCTATAACGGAGACCCTTCCATTACCATGGCGAACTTAATCTCAGTTTATCGACATCACGAGCCTCGAGTGTTTATCGACGTCATGATGTCAGCAATTAACATTCCATTCTCAACCGCCATCCCCAATGcctgttttcttttatcttttgttACAATTTGGAAAATCAGGGCATCTGCTGGAAGAATTTGTAACCTTTGACCCTTTTGGGGCgcatgaaataaacacacaaaaatttTTTTACTCAGCCTACACCGCATGCTTTTTTTCATAACCATGCTCAAAACACACTGGAATCATATTCAAATCTTGGCACTTAAAATAGTTGTATGTGATACAAGGAAGGATTAATTTTACCAATACAGATATACCCCTGCTTTGCACAGATTAGTTAGTTGCATACAATAGATGCCATAGCTGTTTAAATCATGTTCATTTATGTTCACTAATTTAACAACAAAATTACTAAAATCCGCAGTGAACCAAAAATCTGTTCATTATTTagttccaaaaaacaaaacattaaaaatcccAGCATTTACAAAACCTAATCACCAttaattcagtgtattttaGAATACATTTCTCATGCAAAGTATTGTATACCTGTATTGAAGTGATGTGTGTTCATGTGGTCTTCAAGTCTACATGAGGCTCTTCTGTCAAGTGTGACCACAATGCACTACCTGAACCAGTGCGGTGCTCTGTGCAGGATTTCAGCTCACTCTAATGGTTCCATCACTACAAAAAACTCCATTCGATATTTATCTTTCTCCGTACAGAGGTATTCTGTagaaaagcaaataattacTTCACTGAATCTTCATTAAAGTTTCTGTCACTTACTGTTGTGTTGCGTCTTCTACGGTTTGGAGCTGTTTTGATGACTCGTCATCATAGATTAGGGGAGAGCCATAGCCAGAAGGTTTTGGGACCACCTCGGTTTGTGATTTCTAACAGATGTTTAAGGCAAAGGTGATCACATTTCTAAAAATCTGAACAAGGCAGTTAAAAAGgtgttaaacataaaaaaagccCTTAAAATGCTCAgatcattttaataaagttgCCCCTGACACAATCTGTTTTCTGGTGCAGATTGAACTCTAGTGATCTTGAACAATTGGTTTGGTGATCTGATTGAGGACACATGGTTACAAAGAAACTCATTAAATGCTTTATGATCTTTAAATTGTGAACATAAAAAAGGTGGGTTTTGTGTGAGGTCGTAGAACTTGTTTAATACAATATGTATAACTTTCTACTCTGAACAAAACCAgacaactccctcctggcttaCCAGAACTACATGGGTAAAGGAGACTGAGGCCAGTTTTCAACCTCTTATTCCATGAGCCACTATATTTTTAAGTAGATTGAGATGAGGTAGAAAAATCTTGGGTTAGTCCTTTTCAATGCCTCTGTATCCAAGGTAGTTGATGAGCAGCTACTGTGAAGAGGTGAGGCATGGGTATTGGCATGTTAGCTTGTCCCCCTGTACCATTATCTCCACCATTCTGCATCGCAAGCACAGGGCAGAGCCCAGACGGTGCTGACAAGGTCCTCTGTGCATGTTCACACCACTGATTACTGTTGTTTCAGTTGAATTTCATTATgcagtgaaataaatcaaatgcagaCTCCAAATGTCTCGCTAGGTACTGTGACTAAAGGGATTAGTGGTTTAATGTAGAGTTCACATTCATGCCACTGGACTCCCAATGGCAATTAGCACCACAGCAATCCAAATTGAGCTCTTtgcatgaaacaaataaaacaccacCAATGTCttgatctttaaaataaattttgcaaaatttaaataaatgtttgtgtatcTTTATTTAATGGCCATTTATCTGAAATGAGATGTGATTTAATGGG

Function

symbol description
cnot10 Predicted to be involved in mRNA catabolic process and negative regulation of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT10 (CCR4-NOT transcription complex subunit 10).

NR:

description
CCR4-NOT transcription complex subunit 10 isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12607 CNOT10; CCR4-NOT transcription complex subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002534 True 4151 mRNA 0.43 17 18145212 18161564

Neighbor

gene id symbol gene type direction distance location
AMCG00002535 LOC107751889,LOC107704104 coding upstream 94296 17998046 ~ 18050916 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 333485 17806735 ~ 17811727 (+)
AMCG00002525 NA coding upstream 470102 17661879 ~ 17675110 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding upstream 484039 17652475 ~ 17661173 (+)
AMCG00002529 NA coding upstream 673920 17445920 ~ 17471292 (+)
AMCG00002540 LOC106606077 coding downstream 176192 18337756 ~ 18346198 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding downstream 295487 18457051 ~ 18458790 (+)
AMCG00002553 NA coding downstream 638296 18799860 ~ 18810379 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 1205752 19367316 ~ 19385301 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 1245494 19407058 ~ 19410399 (+)
G123833 NA non-coding upstream 92874 18051012 ~ 18052338 (+)
G123808 NA non-coding upstream 204579 17926699 ~ 17940633 (+)
G123797 NA non-coding upstream 385017 17695860 ~ 17760195 (+)
G123653 NA non-coding upstream 996876 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 1003777 17137413 ~ 17141435 (+)
G123916 NA non-coding downstream 343324 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 392921 18554485 ~ 18556562 (+)
G123950 NA non-coding downstream 422605 18584169 ~ 18586027 (+)
G123993 NA non-coding downstream 682804 18844368 ~ 18861644 (+)
G123997 NA non-coding downstream 701114 18862678 ~ 18863965 (+)
G123807 NA other upstream 160482 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1159306 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1185130 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3783676 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 5015515 13125378 ~ 13129697 (+)
G123989 NA other downstream 670450 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 912129 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 968503 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2080284 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4825981 22987545 ~ 22990164 (+)

Expression


Co-expression Network