G123950


Basic Information

Item Value
gene id G123950
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18584169 ~ 18586027 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155399
TGAAATCTGGCTTTTTTATTGATCTCCATTAAAGTGACACTCTTTAAATTGCAATCAGTGATCATACAATTACCCGAGTCAATAGAAAATGTCCAGTGCAATTATTTTGGTGAAAAGAAAGACTCCTAAGTggagttgttttaaaaaaataatatttgtgctTAAGCAGTCTTTCTTTTCACTCAACACAGGACAACACATTGGCTGACTATTGATTTATTCTTCATTGCCTGGTTGCAGTTTCATGGATTCTATGATTAATAAATGCCTGATTTGCCAGCAGGTATCTATGATTTCATTGAGAAGCACACATTGCTGGTAACAGCTTTATGTGCAGGTAGTGACAATAGAAGTAAGCATCAAGAGGGCAGCCCAATTTATAATGCATGAATACCACAAAAATTTAAATggtacaataatacaaaaaaaaaactgcttagaAAACAGAGTAAAGTTATAATAAGATAATACGAGCacagatataaatgtatatcaatgtattaatgttttattctaattacaataaacaatatatcaGTCCCTTATTTGTACAAAAATACCTGAAAAGGTTACAATTAAGATTCATAAGCCATTTCGCTATTTACAGAATGAAGCAAAGCACATTATGAATACAAGATTTTCTCTTAAGAAAGAGATAAGTTaatatccttttctttttttttcctcttatttGCATTCCctgaaatattttactttactcCTTTTTACAGCTTTTAAATCTTGCATTGTGACAAAATATGCAAAGCACAAGAGTCATCACTGAAAAAAGTTTCAACGATTGGTCAAATTATCTGGTGTAGGTTAGTGCAGAGAAGATgttgggctggattaaatcaaaactttgacccacctgctaatagcaaactaaaaacctgtataTCATAGAGGTTACATTTCTGATGATCTGGCAtcaactaaaaatgaagccgcaactgagtacaggttgtgcagttttctattagcgggtgggtcaacgttttgaCGTCAAAAGTGAcgaaagaaagaagaaacaaaaactgaaaatacaagTACTGTAATTGTTATATTTGACATCTATTATTGTACAACCTTAAAGCAAACTAAATAGCAAAAAAATGTTTGGTGTCCCCCTCCTCAACTCAAATCAAGATTACTACACAAATtactccaaaaataaaaataaaaatctcactAGTCTGAACGACCAGTTTTCAACAGGCTCCAAATTCAACCCTGAGCAACCCTGTTACATTCATGTCACTTAAATAGAAAAAGTACATTTCCTTCAGCCACTGATTTAATTCAGTATGAGTTACCAGCTCAGAATTAGTAGGCAATGCATTATGTTAACTAAGCGAGAATATTACTTCAatgcttttatataaaaaaagcaatacactattttatttttagacagcATGGCAAGATAGTTACTCATAATTGTAaagcaatatataaaaaataattttcttttaacCAGTGAatttataaattgcatttttttttcttcttttagcTTAAATTGTTCTTAAACAACTTGTAAAGATGCATGCCAATAATCAGGTTTAATACCTAGAAAGTagcttaatttaaacattacagaTATATTCCTTAAAGGGTATTTTTTGTGACAAACAacagcataaaacaaataataaaatctcaATCTGTACActtatcaaataataataaaaaagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcaagtttcTTCATTTTATATGCAGTTatgataaacacaaaaatgcattcaatagtGATCTGTAACCTAAAATACAGTGTTGCATCTACAGGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155399 True 1859 lncRNA 0.30 1 18584169 18586027

Neighbor

gene id symbol gene type direction distance location
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding upstream 125379 18457051 ~ 18458790 (+)
AMCG00002540 LOC106606077 coding upstream 237971 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 422605 18145212 ~ 18161564 (+)
AMCG00002535 LOC107751889,LOC107704104 coding upstream 533253 17998046 ~ 18050916 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 772442 17806735 ~ 17811727 (+)
AMCG00002553 NA coding downstream 213833 18799860 ~ 18810379 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 781289 19367316 ~ 19385301 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 821031 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 1444131 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 1643700 20229727 ~ 20238940 (+)
G123943 NA non-coding upstream 27607 18554485 ~ 18556562 (+)
G123916 NA non-coding upstream 74395 18504888 ~ 18509774 (+)
G123833 NA non-coding upstream 531831 18051012 ~ 18052338 (+)
G123808 NA non-coding upstream 643536 17926699 ~ 17940633 (+)
G123797 NA non-coding upstream 823974 17695860 ~ 17760195 (+)
G123993 NA non-coding downstream 258341 18844368 ~ 18861644 (+)
G123997 NA non-coding downstream 276651 18862678 ~ 18863965 (+)
G124067 NA non-coding downstream 697851 19283878 ~ 19284277 (+)
G124070 NA non-coding downstream 747772 19333799 ~ 19384234 (+)
G124094 NA non-coding downstream 805096 19391123 ~ 19394724 (+)
G123807 NA other upstream 599439 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1598263 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1624087 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 4222633 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 5454472 13125378 ~ 13129697 (+)
G123989 NA other downstream 245987 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 487666 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 544040 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 1655821 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4401518 22987545 ~ 22990164 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009691 NA non-coding NC_007127.7 CM002900.2 8355479 ~ 8372570 (+)
mexican tetra (Astyanax mexicanus) G110707 NA non-coding NC_035909.1 CM008312.1 12718644 ~ 12722797 (+)