G124094


Basic Information

Item Value
gene id G124094
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19391123 ~ 19394724 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155588
CCAGACACCAGACTTCATTTGGTTCAGgtacatttcattcattttgttttctgtgagaATACCCGTGACATGCTCCAAAAAGTTCATTTTGGCAaaccacaaataaattaaacacaaaaaaattcATATAATACAACATGACAGAACACAGCATAggacattaaaacaaagaacaccccccacccacccccagaaaaatcaaataaataaaaataagaagcatttttttttcttctcctttttaaaaaacaagaaaactaacAATCACTGATTACATGCAGATATAAGGTAACAGAATCATCTCACTTGTTTCAGacaattagtttaatttgtttctgcaAACTACCATTCTAAAGTCTATCACAAAAGTTATGCTCCTAATCCAACAAACACCCaattttctgatattttgtctttttattataatgaattgtattataatattcCCTAACATAGGTCCTTAGAAACACATACAACCACTTTTGGAATGACAGGTTTCATACAGAATCTGAAAAAGACCTGCTGTATATTTAGATACCAGATGCTGCCTGAAAATTGGCTATTTTCTGCTCCGCGGCAAACCTAATAAAACTGGAATTCTACATTCTATTCCCATGACAAAATTATGCTCATGGTAAGACACTCTTCagggtattaaaaaaatgaaaaacagtagTTCAGTCTGAGGTTTGTATAGGCGAGAGACATTACTTATTTCTCATTCAAAGTCTGGTGGGGGGGATGGTTTTAATTTCTACACAGGCTTTTTAACTGTAACATCAAGAGTGGATGTTTCCACTAAAAAGAAAGATGATCTAATGTTCTCTGTATGCGTCGTAAGGGAAAcgtttaatcccagccttaattttaatataaatgaatagGATTCCTTCGTCCTTTATCTCAAATCAGTCCGTTATCTAGTACAGTAACACAATCTAGATCAGGATGGGTAAATGAGTAAAGAAAGTGGACCTCATTAGTGGGTACTCACCTAGGGGAGAGGAAAACGCATAACATGAAATGGGGGAATGGCTTTGATAAGAGAGTTTGGGGTTGCTGATGTTTCCCTGGGAAGGTTTCTCCTAAAGATCCTGGGATTATTTGGGGAAGGGAAAGATATCCCCTCTCCTCTTTGGTATTGCCCATGCTAGCTGAGATCTGTTTTCATATTCTTTCTGTTCAGATCGTTAGCGGGCTTATTATCACTAAACATGAAACCTACTGTTGGAAACATAATCAGTAATTGGTTACCATTCTAAATAACATTCGCTGAaagacattttttctttttctagttATGGAATAAGATTCTGGTAGAGATTAATccaattatgctttttttttttttttctctccatacagggaacaaaatcaatattaacagttaaaaatgttacaaaatgtgcTGCCACGTTTTTAGTCTCTttctcaaaaacaaatcatgtacTTTTGACCTTTCCTTTTAACTGTAAATGACTGATTACATAATTTCGTTCTGCAAGGAGGGATGGCACAGACAGGTGCATGCTATTCAACTTCTTGTAAATccagtttaaaaatgcaaaataagcTATATCCCTACCAACAGATTGCTTAGTAGCCTGTGAAGTGCATTACATATGTGTTCTGCCATTAACTAAAACTATACAAATCTGGAAAGTGGTAAAAATGCAACATTCCCTTTAAAACATGAACCAGTAGGTCCACATAAGACTGCTCGTATGTCCTAAATGCCACTTTCGTAAACCTATACACTGATGGAcagaattgtaaatgtatatttgtggtTTAATCTGTTGTACAACTGGATGTAGAGTTCACTAACAAACAGGACTTCAGAATGGCCACCCAAAGTGATTTTCGCCTCTTAATGCTATTAAATTGAGCAAAAGCAGCAAGCCAGTTTGAGATTCAAGTCAAATGAGCTGCATTCATGATATTAAATGACATCTACACCTTAATTGCCTTTGTCTTATCACATGTAGAGGGAATTCTTATTCGAACGTTCCATTTTAGTACTTGCTTGAAATGAGTATCACTCCGCAAATTAGTCACATGCTCGTCAGCTCTCTCTTTAATGCAAGCACAGTCGGGAGATAatttacacagagacacaagtCAAGGAAACCGTGAACAgcccaaaaaacaaattatgtggagcaataaataacaaatctgtGTTCCGTAAAAGTATAAAGACATGGTTTCATACACCTATTAAATGTCAGTTCTCCATATAGTTGTTGAATgcgaaacaaataaaaaaaactttaacacCTTATTGCCGCCAAAACGCATCCCTTCTTAACCTTGCCTCTGAGAATGATTATACAGAGAACTGAATTTGTGATTTATAAccaccccctcacacacacactcacacacaggggAGGCCTCACAAAAACTCTGCCATCTGGTATCCAAATGATCAGCATTATATAGCACAGGTCTTTCTCCAAATACATGATAGTATCAACAAAGAACCATAGATAATCGCCATTGGGTTTTGTCTTTACAGTACCGCAGCATAAGCAACattttgtgtgattgttttttttttttttttttcttcactggaAATCAATGGCCATCTACACAACATGGTGATGTCTAAATTTAGccacgagagagagagagagagagagagagagcacagctCCACATAAATTACAATCTTCAAGTTGCATTGACCTgtgaaaaacagcacagcaaaaaaaaaaaaaaaaaagaaaaaaaaaaaagtgaacctCAGACGCACTGCCTGTCTATTAAATATTAACggcttaatttgcatttaaatgagagGCGCAGGGGTGGATGGAAATTTTGATGCCATTTAGTGCAGTGCATTGCTGgcatagagggagagaggcggGCGAGAGCACACACAAGATGAAGTGGGGCAGGTGAAAGagtctGGTGGGAACGCGCACAAAGGGAGCAGGGCCACGTCAGCCGTCGGACACGGGAGGGGACACCCAGCCGTATTTCTCGTGGGTCTTCACCAGGCTCTTGAAGGTGGCCTCCGCTTCTTTGCGACTGAAGGCTTTCTTCGATTTGCCAGCTTTCCTGCAGATGCGGCCCTGTGGGAACAGAGAATAACAATAAAGGCATGTCAGGGGCGACCCTTGCACAAAAACATCGCTTAAGGTGTATTTCTTTTGAGGTGTCACCATTTTGGTGGACACGCTGAAATTGGAATGGAATAAATGCTgctgtttaatataattatccAGACAACTAGTTAATGGACACTAATATTCCTCTTTCTTATCCATCTCCTGCTAttggctgtttttcttttccattaaaCATACCTTTTGTGTAATTATAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU155588 True 3337 lncRNA 0.38 3 19391123 19394724

Neighbor

gene id symbol gene type direction distance location
AMCG00002565 nsun2,LOC107595606 coding upstream 5822 19367316 ~ 19385301 (+)
AMCG00002553 NA coding upstream 580744 18799860 ~ 18810379 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding upstream 932333 18457051 ~ 18458790 (+)
AMCG00002540 LOC106606077 coding upstream 1044925 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 1229559 18145212 ~ 18161564 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 12334 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 635434 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 835003 20229727 ~ 20238940 (+)
AMCG00002574 NA coding downstream 975819 20370543 ~ 20396006 (+)
AMCG00002575 slc6a3,LOC108272311,LOC107558633,LOC107564665 coding downstream 1017112 20411836 ~ 20426798 (+)
G124070 NA non-coding upstream 6889 19333799 ~ 19384234 (+)
G124067 NA non-coding upstream 106846 19283878 ~ 19284277 (+)
G123997 NA non-coding upstream 527158 18862678 ~ 18863965 (+)
G123993 NA non-coding upstream 529479 18844368 ~ 18861644 (+)
G123950 NA non-coding upstream 805096 18584169 ~ 18586027 (+)
G124150 NA non-coding downstream 766823 20161547 ~ 20161753 (+)
G124165 NA non-coding downstream 845861 20240585 ~ 20240879 (+)
G124178 NA non-coding downstream 964599 20359323 ~ 20359695 (+)
G124232 NA non-coding downstream 1166898 20561622 ~ 20562263 (+)
G124331 NA non-coding downstream 1730291 21125015 ~ 21170354 (+)
AMCG00002561 NA other upstream 257556 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 263176 19073693 ~ 19127947 (+)
G123989 NA other upstream 552592 18832014 ~ 18838531 (+)
G123807 NA other upstream 1406393 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 2405217 16976288 ~ 16985906 (+)
AMCG00002573 NA other downstream 847124 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 3592821 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 3673400 23068124 ~ 23180043 (+)
G124689 NA other downstream 3757924 23152648 ~ 23290535 (+)
G124769 NA other downstream 4283211 23677935 ~ 23681385 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2308198 NA non-coding NC_050572.1 CM025859.1 22611264 ~ 22614686 (+)
eurasian perch (Perca fluviatilis) G198269 NA non-coding NC_053130.1 CM020927.1 33082607 ~ 33082810 (+)
tiger barb (Puntius tetrazona) tmem167a tmem167a,LOC107658615,LOC107588977,LOC103397084 misc NW_025048028.1 JAEQBD010000373.1 133827 ~ 182008 (-)
mexican tetra (Astyanax mexicanus) G198092 NA non-coding NC_035919.1 CM008322.1 16673080 ~ 16677784 (+)