AMCG00002441 (ikzf1)


Basic Information

Item Value
gene id AMCG00002441
gene name ikzf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14655853 ~ 14666224 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002441
ATGCTAATACTAAACGGCGCACTACTGCCATTTCTTTCAGCCGGTAATATTAAGGTAGAGTCTCAGAGTGATGAAGAGAGTGGTCGTGCCTGTGAGGTGAATGGGGAAGAATGTGCGGAGGATTTGCGAGTGCTTGATGCCTCTGGAGTGAAACTGAATGGCTCCCACTCTGGCCAAGACGCCAAGGCCTACTCCTCAGTCGGTGGCATCCGTCTCCCCAACGGGAAGCTAAAGTGTGATATCTGTGGAATAGTTTGCATCGGCCCCAATGTGCTAATGGTTCACAAGCGAAGCCATACCGGAGAACGGCCATTTCAGTGTAATCAGTGCGGGGCTTCCTTCACACAGAAGGGGAATCTGCTTCGACATATAAAGCTGCACTCTGGAGAGAAGCCCTTTAAGTGCCACTTGTGTAACTACGCCTGCAGACGCAGGGATGCTCTTACAGGTCATTTACGGACTCACTCTGTCGGGAAACCTCACAAATGCGCTTACTGTGGGCGGAGCTACAAACAGCGCAGCTCATTGGAAGAACACAAGGAGCGCTGCCATAACTACCTGCAGTGCATGGGCCTCCAGAACACCATCTACTCAGTAGTAAAGGAAGAAAGCAACCAGAATGAGATGAGTGAAGACTTAAGCAAGATGGGATCAGACAGAGCCTTGGTTCTAGACAGACTAGCTAATAATGTAGCCAAACGTAAGAGTTCTCTGCCTCAGAAGTTTGTAGGAGAGAAGAGGCTGTCTGACCTCTCCTACGATGGCAACTCCAGCAGCTTTGAGAAGGACAGCGAAATGATGCAGCCACACGTAATGGACCAAGCCATCAACAGCGCAATCAGCTACCTGGGGGCCGAAGCCCTGCGCCCGCTGGTGCAGACTCCCCCCGCCTCCTCCGATGTGGTGATGAGCCCCATATTTCCTCTACACAAGCCAATGGGCGAAGGGCAAGTCCGCAACAACGGGCACGGCCTGTCGGCTCAGGACAGCGCCGCCGAGAACCTGCTGCTACTCTCCAAGGCCAAATCCGCCTCCACGGAGCGCGATGCCTCCCCCAGCAACAGCTGCCAGGATTCCACCGACACGGAGAGTAACAACGAGGACCGGCCTGGTGGTGGCGGTGGAGGCAGTGGCCTCATCTACCTGACCAATCACATCACGCCGTCGGCGCGGAACGGGGGCATCGCCTCGGTCAAGGAGGAGCAGCGGCAGTACGAGGCTCTGCGCGCCGCCGGGATGGACCTGCCCTCTGACAGCTTCAAGGTTATGACCGGAGATGGGGAGCACGTGAAGGTGTACCGCTGCGAACACTGCCGCGTACTCTTCCTCGACCATGTCATGTACACCATCCACATGGGCTGTCACGGGTTCCGAGACCCCTTCGAGTGCAACCTCTGTGGCTACCGCAGTCAGGACAGGTATGAGTTCTCCTCCCATATGACCAGAGGGGAGCACCGCTATTGATCCAGAGGGACTTTCGACTTTTACAAAATTTCATTTCCTGAAACAAATTGCATGGTtagtaatttttattttcaaagagcacacttatttgaaataattttataatCTGTCCTTAAGAAAGACATGGGTCGCTGTTAACATAAATTATCAGCAATGGCTGAGTacacctgttttgttttgtttgttgacaCTGGTATCTTAAAAAAGGGAATACTCAAGAAGTAATTTGACTGTTTCTCTCGCATCCATGTGCTGGCATCTTAGCATGGGACAATTGTTGAGAAGACAAACATGCTGTATAGACTTATagttatacattatacaatagTTTACAATGCAAGAAAACAACGGGGTGTAAGGTTGATGTAGCATAAAAccttttaaatctaaataatatttttatagcATTCTAGAATAAATTATGACTCCTGCTGGAATCCTGCATGCAACTCTTAAAACGGCTTCAGTCTGGAACAGACAGGGTGTTTGACTTTAAACCATTAAATCACTAACACATTGACAGTAATGATAGGTGAGGGAGGCCGATATCTGCTTAATATCCACATCTTAAGAGAGCAAGTGCCACTGTTTTGCAAAAACATCCTTAGCCTTATTGACCATAATCCATTTGTCTAAAATGCTTATCCATTTTAATGAAATAGTGACCttttaatgcaaatatgtaATAAACTCTTCCAGGTGCTAATTCTATGCATACATTGTTAACAGCAATGTAAGtcatttgaaaaactgaagaagCAAGtcctaaaaaaaatatttttgtttgtggtaTTTTGTTACATAGTTAATTTTTAAGGAATTACACCATTGCTCTCTATTACTCATATTATCCATTAATTACTGATTTAGCAGTCATTCCAAACAGCAGGACGGAGCTGGGTTAAAAACAGCAAATGGAATTCTAGCAGGAGTGAATTATACTTTGTatagttaaaatataattgtggattttttctttgtttatttgctgaTGTGTATAGTgcttattatttcatttttaaagcagataAGAAAAATCGTGCTAATGGCACCAAGGGAAAAGTGAGAGGTGTTTTTTTCAACTTTCTGagcataaatgaaaatatgatgtTCATTATTTCatctatatttttgttttattttattgtattgttagtGTAGTGAAAATATTGTGCTTTCACAATGCACAGCACGCTTATTTTGCTTCTATGGTGCCGCAGTCTAGAGCACCATCCAGAGTTGAGATGAGTTTTATTCTTCATGGCTCTCTGTAAATAGGACTAGAACTAcaggaatatacactcacctaaatgattattaggaacacctgttcaatttctcattaat

Function

symbol description
ikzf1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within B cell differentiation and T cell differentiation in thymus. Is expressed in several structures, including hematopoietic cell; hematopoietic system; immune system; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma and common variable immunodeficiency. Orthologous to human IKZF1 (IKAROS family zinc finger 1).

NR:

description
PREDICTED: DNA-binding protein Ikaros isoform X7

GO:

id name namespace
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09220 IKZF, ZNFN1A; IKAROS family zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002441 True 2811 mRNA 0.45 5 14655853 14666224

Neighbor

gene id symbol gene type direction distance location
AMCG00002444 NA coding upstream 13903 14638876 ~ 14641950 (+)
AMCG00002442 NA coding upstream 41760 14605664 ~ 14614093 (+)
AMCG00002439 NA coding upstream 78869 14566399 ~ 14576984 (+)
AMCG00002440 NA coding upstream 196247 14399187 ~ 14459606 (+)
AMCG00002429 ino80c,LOC107706244 coding upstream 778056 13867114 ~ 13877797 (+)
AMCG00002443 NA coding downstream 19844 14686068 ~ 14686970 (+)
AMCG00002451 NA coding downstream 211925 14878149 ~ 14911316 (+)
AMCG00002450 NA coding downstream 256198 14922422 ~ 14946523 (+)
AMCG00002449 NA coding downstream 284814 14951038 ~ 14962371 (+)
AMCG00002456 NA coding downstream 706782 15373006 ~ 15378676 (+)
G123171 NA non-coding upstream 285940 14369093 ~ 14369913 (+)
G123169 NA non-coding upstream 289518 14365036 ~ 14366335 (+)
G123043 NA non-coding upstream 1065172 13572519 ~ 13590681 (+)
G123041 NA non-coding upstream 1085042 13566414 ~ 13570811 (+)
G123039 NA non-coding upstream 1109553 13546064 ~ 13546300 (+)
G123197 NA non-coding downstream 25757 14691981 ~ 14692776 (+)
G123295 NA non-coding downstream 596725 15262949 ~ 15340169 (+)
G123386 NA non-coding downstream 1023377 15689601 ~ 15689963 (+)
G123388 NA non-coding downstream 1128184 15794408 ~ 15795149 (+)
G123468 NA non-coding downstream 1819602 16485826 ~ 16489952 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 294317 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 1526156 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 1585021 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 1603882 13031759 ~ 13051971 (+)
G122746 NA other upstream 2515388 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 2291937 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 2310064 16976288 ~ 16985906 (+)
G123807 NA other downstream 3249212 17915436 ~ 17984730 (+)
G123989 NA other downstream 4165790 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 4407469 19073693 ~ 19127947 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location