AMCG00002424 (tmem245,LOC103353896)


Basic Information

Item Value
gene id AMCG00002424
gene name tmem245,LOC103353896
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13700250 ~ 13718461 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002424
TGTATCCACGGAGACCGCTCACAGAGCGACCATGGCGGAGGAGCGAGGCAGCGGGCCCGGAGCAGAGCCGCCCGCCGCCCCCCAGCGCACCCCGCGGGGCCCGGACAGCCCCCGCTCCCCCAGCGTGACCTTCAGCGAGGCGGTGCACCCGGCAGTGACGGGCATGGTGTCCCAGCTGTTCGCGCAGCAGCCCATGGCGCTGAAATTTGATAAAAACATCAAGCAGGCCTTCTACAACACCGGGGCCATGATATTCGTGGCGATCTGCTGCGGGGCGTCGGTGCTGGTCTACTTCATCCTGGAGGCCTTTCTCCGGCCGCTGCTCTGGGCGGTCCTGTGCGGCACTTTCCTGCACCCTTTCAAGTACTCCCTGGCCCGGGTCGGCCGGTCGTGGCTCTCCCGCTTGCAGGACACCCGGACCCCGATCGTGCTGGGCACCTTGCTGCTGCCAGTCTGGTTCTTCAACTACGGCGTGGAGGCTCTGGGGGCCCTGGTGCTGGAGCGGCTGCGGGCGCTGCTGCTGATCGGCGCCGGGGTGCCGCTCCTGTGCTTCCTCTACTACTTCGGCAGCGTGATCTGGATCCAGGTCATCCTCGCCCACTCCTGCGACTTCATCAGCGGGGCTCTGGACTGCTTCAGTGCGGCGTGGGTTTGCACTTTAGTGGCCGGTTATGTACTGGCAGTGGCTTTTAAATGGACCCCCAGCACGGAGCGCTATCTCCGGGCCGTCTCTGTGCCAGTGTGGATAGTGCTGCTCTTCTACCTGGCCTCTGTCACAGGTTCATGGAGGATCCCTGTGTTTGTCATCATAGTGTCTCTGCTGATCGTGGGCACGCTGTACGAGAGGCAACACGTCCAAGGCAAGAccGGGGAGCTGGCTGGCACGGTCCTGTCCGTCGCAGCCAACACCATCTTCATGGCCATCTCCTGCAGCGGCTTCGCGGCGCACGAGGAGGAGACCTCCGGTGCCCAGCCTGGTCAGCCTGACTCCTCCCAGGGAGAGAGCCCCAGTTCTGCCTCCGGCTCCCCCAGCAGGACGACGGCGAGGTTGCAGCCTGAGTTCCGCGACTtgctgaagaaaaagaaagccagTGACATCTACTTTGTGATGCTGGTGTGGGCCATCATTGCAGTGCAGATCTGGCTCAACCTCTGGATCCTGCAGCTCCTGCCCATCCCTGTGGCtgTTTGGGTCTTGAAGAAACTGGTGATGCGTTTTGGGCTTTTGGACTTCGCTGAGCGGAGCCTGGCATCCTGGGGCACAGTAGTGCAGGGATTCGTGCGCGAGCGGCAAGATGCCCTGGCCCCTGGACCCATCAAAGGCCTGGCCAACTTCCTCTTGAAAATGGACATCAAgATGATCGTGTGGCTGGAGCGCTCTTTGGACAAGCTCATCAGCATCTTTATCATCTTCCTGCTGGTCATGGGGACTTTGCTGCTGGCTCTGCTCCTTACTGCCAAGGTTCACCATGAAAGCGTGCACATCATCCAAGTCACCAGCAACCTCATCAACGAGACTGTGTCTAACCACCCCGAGTGGGCCAACTGGCTCCCAGAGGCTCAAGTCGTGCAGAAGGCTCTGAATTCAGCCGCTACTAACGTTTACCAGTATGGACGAGAGTGGATAACACTCAAGCTCCACAAGATGCTGGGCGAGAAGGTGAACAACACAGCGGTGATCGAGAAGCAGGTGCTGGAGCTGTGGGACCGGCTCTACCAATCCTGGTTTGTCAAGAACGTCACCTCTTCGGGTCGGCACCGAGGTCAGAAGTCATCCATTCACCGTCACAACAGCTGGCTGGGGGACATCCTGGACTGGCAGGACATCGCCTCCTTCGTGCAGGAGAACATCGAGACCCTGCTGTCTATCCTGGAGTCTCTCTGGATCGTGATGAGCCGCAATGTCAGCCTGTTGTTCACCACAGCCACCACCCTGCTGACTGTTTTGTTCCACAGTGGGACGGCCCTCCTAAACTTCGCTCTTTCGCTGGTCATCTTTCTGACCACCCTGTTCTACCTGCTAAGCTCCAGTGGGGAATACTACAAGCCTGTGAAGTGGGTGATCAGCCTGACGCCGCTGTCCCAGCCTGGACCCTCGTCCAACATCGTAGGCCAATCTGTGGAGGAAGCCATACGAGGGGTGTTTGATGCCTCCCTAAAGATGGCGGGATTCTACGGGCTGTACACCTGGCTCACCCACACAGTCTTTGGGATTAACATCGTCTTCATCCCCTCCGCCCTGGCTGCCATTCTGGGTGCGGTTCCCTTCCTGGGCACGTACTGGGCGGCGCTGCCCGCGGTGCTGGACCTGTGGCTGGCACAGGGAGAGAGTGTGAAGGCTGTGCTCCTGCTCATTTGCCACCTCCTGCCAACCTACTTTGTGGACACGGCCATCTACTCCGACATCTCCGGTGGTGGGCACCCCTATCTCACCGGCCTGGCGGTGGCAGGAGGGGCGTACTACCTGGGCCTGGAGGGAGCCATCATCGGACCCATCCTGCTTTGCATCCTGGTGGTGGCCTCCAACATCTACAGTGCCATGCTGATGAGTCCCAGCAGCAGCCAGCCCACCCCCGTGCAGCCGCCTTGGCCCGCACACCCGCCCAGGCTTTTTGCCGACAGTCCCAGTGCGCCGAAGAAGGGGGTGGAGTGACGCTCGGGTGGGTGTGACCAAGCTGGACCCGGGGACGGCCGCTCCTGATTGGCTGTTCCGAGCTGCTTGCTGATGCCTCGCGCTTCCCGTGTGCCAATCGGAGGCAGCCCTGCACTGTCCGCTCTTCATCACCTCACAGCTGCTGGCCTCCCTCCTCTGCCCTGCGCGTCTCAGGTGGGAGAGACCTGGTATTTTTTAGGGCTTTAAGAACTCCCACCCCACTCACCGGCAGCCATACAGCTTCACAGGAAACAttagctgttgtttttgtcgtttttacagtttgtgtgtttgtaatagACTTGGCTATGGAGAGACATAACAGCAGATGCCGGCGAGTTTGACTGCAGCTTTTTACACTCTGTAGTCTGTGTGACTTGGTACTACTGGGCACGCAATGCTCACCCCACGCCCGCCTCCCGTTGTGTTGGGCACTCTTGAAACGACAGACATCAGACTGTTGCCCTCAGATCAAGATTCGACAACGGGGCACTGGAACAAAGAACAACGGAACTGAACCCTGTTGGGAAAACTGTTCAACACAAGCAAtaacacatgcagacacacgcTTGCACACGTGCAAGGGGACAGTTGGCACGTTGGCCGAggacagggctgcagtctgtgACCCAGGCGGGGGAAGTGCAGTCCCTGTCCCTTTCCACTCCGGACCCGTGCTCCGTATTCCAGACGGGCTGCGTTTCAGACTCTGGGTTCGGGTTATAACGACAGCCACAGCTTTCTgcgttgtttttgtgtgtgtgtttaggttcAGTCAGTGAAAAGTACGCACTTTCAGAGCAGAAAAAGGTCCCGTCGTATTCACAGCTCCTCCGAGAGAAACATAAAGCAGCCGCTCTCTGCTGTGCGCTGGGAAGGGAAGGTTTGTGTTGCCATTGCGAACAATCAAATTCTCTTTGAAGTCGCAGTTTGCACAGTTCATTCTCTGCTGCCCTCAGGCTTTTGtactatattgtttttcttgtttgtttattgataaaaccttttttattttattttgttattttaaatgtttactttgcTGTTCTGAAGTGTCTTCTCtgttaaatctttttttttttgtcataccGATTCTTGGTGCCTATTATAGTTGTGGCTGttcatgggggggggggggtgag

Function

symbol description
tmem245 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM245 (transmembrane protein 245).

NR:

description
PREDICTED: transmembrane protein 245

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002424 True 3795 mRNA 0.58 17 13700250 13718461

Neighbor

gene id symbol gene type direction distance location
AMCG00002423 frrs1l coding upstream 3648 13691020 ~ 13696602 (+)
AMCG00002422 NA coding upstream 43692 13655239 ~ 13656558 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding upstream 188967 13490178 ~ 13511283 (+)
AMCG00002413 NA coding upstream 244752 13440937 ~ 13455498 (+)
AMCG00002414 NA coding upstream 261056 13430836 ~ 13439194 (+)
AMCG00002429 ino80c,LOC107706244 coding downstream 148653 13867114 ~ 13877797 (+)
AMCG00002440 NA coding downstream 680726 14399187 ~ 14459606 (+)
AMCG00002439 NA coding downstream 847938 14566399 ~ 14576984 (+)
AMCG00002442 NA coding downstream 887203 14605664 ~ 14614093 (+)
AMCG00002444 NA coding downstream 920415 14638876 ~ 14641950 (+)
G123043 NA non-coding upstream 109569 13572519 ~ 13590681 (+)
G123041 NA non-coding upstream 129439 13566414 ~ 13570811 (+)
G123039 NA non-coding upstream 153950 13546064 ~ 13546300 (+)
G122929 NA non-coding upstream 394651 13304697 ~ 13305599 (+)
G122914 NA non-coding upstream 510388 13189282 ~ 13189862 (+)
G123169 NA non-coding downstream 646575 14365036 ~ 14366335 (+)
G123171 NA non-coding downstream 650632 14369093 ~ 14369913 (+)
G123197 NA non-coding downstream 973520 14691981 ~ 14692776 (+)
G123295 NA non-coding downstream 1544488 15262949 ~ 15340169 (+)
G123386 NA non-coding downstream 1971140 15689601 ~ 15689963 (+)
AMCG00002393 NA other upstream 570553 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 629418 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 648279 13031759 ~ 13051971 (+)
G122746 NA other upstream 1559785 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1684166 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 609171 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3239700 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3257827 16976288 ~ 16985906 (+)
G123807 NA other downstream 4196975 17915436 ~ 17984730 (+)
G123989 NA other downstream 5113553 18832014 ~ 18838531 (+)

Expression


Co-expression Network