G312838


Basic Information

Item Value
gene id G312838
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000097
NCBI id null
chromosome length 390960
location 53946 ~ 90969 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU355662
GCGGAACACCATTGAGAGGAACGGAACACAATTCGGCATGTGCATACTCCGAATTAACCATTTTAATGTTTAGAAGCCGTATTTTGTGCGACACTTAGGTCATTGGGATGCGATGCGCTCTTCATTGAGGAGACTGGCGCGAGAGCGTTATTAATAATCAGCTTTCATAAGGCGCGCGAGCTGTTAGACAGGTGTTTTCGCTTGTTTCGACCACCTGCCCTGGTACCATGATGTTAGGGCAATCCCCACACCTCATCGGGGGGATCCTCTGGATTCAAAACCCAATGCGAGGTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCTCTGAGGACATCTGTAGCTGTGTGATCCGAAACTTGTATTGAATGACGTCTTATCGATTGTAACTCTATCGTATTGGCAGATCAGTTGAACCAGGAATAATGTGAAGAATTAACATCAGTTAACTTCAATCTCATGTGTGATCTAGTGAGTTATGCTTATTAAATTCGGTGTGTGGAATGACGGAATAGCTTATAAAGCTCAGACTTATAATAGCTAGGGCTAGTTTGCGTCCTTTTTACTTGGGTAACTATTCGTAAGGGTCGTTTTTTTTTGTACAAGCACAGGCTTAAATCATTGACTACAAAAAAGCTATCGGATATTTCCTCTCGCACTGGAAAAAAGATACAATTCCTTAAAAAGATGTTTATCTTTTGTGACAACATGCCCCAATAGCCCTGCATGGTGTCACTGTAGAGTACAGTATATGGGTTAAGATGGAACCTGTTGTTAAACAGCCTATTATAGGATTTTCAGCAAAATGTAAACATTATGAAACGCTAAGAATAAACATTCACTTTACAGAAATATGATGATTGGAATTTTAGTTTTTAAGGAATCTTAATAAGAATCTTATAGATAAACTGAACTGTGACGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGATTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACGCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCGCGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGACGACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAAGAAGAAGTTACAACTTTTAAATGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCCACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGCGTTTAATTGACCCTCGTTTGTGGTGTAAAATGAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCACCCCCTTTGTTGTGTGTTCTCGGGGCGGGGTTTATGTAAATTTTGGGGTTTGTGATGTCACTAACCCGGGAAGAAGCTTGTTGTAGTCCCTACCAGCCGCTTGTTGTAGTCCCTTTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGCGTTGTAACTTTGCAAATTTTGTTTATGCTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAAGTCAAATCATAATCAAGGACCCCTTTAAGAGGATTCTTGTTTGATCCGATTTGGTCTGGTTCCAAATATGATTGCAATTCCATTTGCATTTCTTAGATTCTTTGGCTTTTGATTTTGACCATTTTAATGGAAAATGTTTGATTGTTAGAGCCCTGATTCATCTTATACATGCACTTTGTGAATAAATGTGATTAAGCATTCCCTTGACTCAAATTTAATGAAGATAGGGTAAATGCATCTTACCATTTTAGAATGAAAACGTCCCATAACATTTTGTTTTTAACATCATACCAAATACTGTCACTTACATCCTGAGTTGGTCCAAAAGCTAGAATTACATTTCCAAATGTTTTGTAGTCAGCATACTGAAGATGTCCTGTCTCAGCATATACAGTCAAGAGAATTTGTGTTTTACATTAAGGGCATGCACACACAAAACATAATGGATCTTTAGGGAGAGTGCATTATTCCACTGAAAAATGGGCACTGCCTAAAGAACTGTTGCAAAACTGTGAGTGATTATTAAACCCTTCCTAGTATGGTTTGCAGTATCATCTCAGGGGCGTTCTTGTATAAATGCTTTGGCTCTTCAAAACACTTTTGATTCTTCTTCGTGATTGGTCATCAGGGACGTGACATATAAGCTGAAACCAAGCCTGAATGAAGAAGACAGCAGTATTACTCAGCTGGAGGGCTGTTTAGTGCATGCTCTGAATGATTCGTCCTTAGTGGATGCTGTTCTGCTTTTAGAGTGACGTTTACATATTATAAGACAGCAAAACACTAGATTCCTGCATTTGTGATATGCACTAAATTATGCTTTTTGGGATATTACCATTCATGTAGTGTGTAATACAGCTGATTGTGAATGTAAAAGGTCTGCAAAGTTTCAAAGATCAGCAAATAAATGGAGTTTTTGTCTCCTAAAAGAACTGATTCTGAACTGCCTGAAACCTACGTAGGTTTTAACTAATTTGCATAATGCCAGCCCATTGGCTGCTCGCGAACAGTGTCTGCTTTGCCCCGCCCTCAAACACTGTAGTTGTATCTGAGACTGGAAGAGTTTGGTTCGTGTTGTTCATGTCGAGAAGACGCTGTTTTCTGCTGCCAAAGAAAATCCACTTTGATGAGATCGATACGGTAAAACCGACGCCATCATTACTGTTTGATGTATCAAGTTCTGAGGAAGAGCTGAAATTCAGATATGATAATGAGAGTTTGGTTTCCGACTAATCAAAACAGACTGGGCCATCTGACCAATCAGAGGCTCTCAGAAAGGCGGGGTTTAGATAGACCGAATCCTTGATCGAACCGTTTCAGACACAGAATTAGCAATCTTTAAAGGGGTGATGAATTGAGAAATCAACTTTTCCTTGAGGTTTTGATATATCAGAGGTCATCTTACTATAAGCATATCCTGTAAGTTTCAGAACTGAAAACTTCCTTGTTAGTCCAATAAAAGCTTTTATTGACACCAGACCCAGCGAATGACTTATCCTGTCATAGATAGATGAAACTCCGCCTCCACAGAAGAAATCAACGCCTACTTCATCATTGCAACATTAGCCCCGCCCACTGGTGTGTTAGTGAGATGAGGAGGAGAGAAGAGCGATACAGGACTAAAATAACATTACCTTTCAAAGGATCCTAATGCTAGGAATATGGTTATTTATTTTCAACAATGTGAATGTCTCAGTTGAGCTTTATTTATTTGTATTCGGTTCATTTCACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU355662 True 3366 lncRNA 0.39 3 53946 90969

Neighbor

gene id symbol gene type direction distance location
CI01000097_00095560_00100777 NA coding upstream 4297 95266 ~ 100795 (-)
CI01000097_00115317_00182129 ANGPT1 coding upstream 24348 115317 ~ 182129 (-)
G312878 NA non-coding upstream 228556 319525 ~ 323591 (-)
G312879 NA non-coding upstream 232822 323791 ~ 330633 (-)
G312877 NA non-coding upstream 244258 335227 ~ 343029 (-)
G312875 NA non-coding upstream 252178 343147 ~ 343961 (-)
G312909 NA non-coding upstream 286896 377865 ~ 378260 (-)

Expression


Co-expression Network