G314807


Basic Information

Item Value
gene id G314807
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1908575 ~ 1909070 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU357958
CTGTCAAAAATACTAGAAAAGGCAGTATCATCACAGCTATGTTCCTTTTTAGAAAGAAATGGTATCTGTGAGGATTTCCAGTCAGGATTTAGACCATACCATAGTACTGAGACTGCTCTCATTAGAGTTACTAATGATTTGCTCTTATCATCAGATCGTGGTTGTATCTCTCTATTAGTGTTACTGGATCTTAGTGCAGCATTTGACACTATTGATCACAATATTCTTTTAAATAGACTCGAAAATTATGTTGGCATTAGTGGAATTGCATTGTCATGGTTCAAATCATACTTATCTGACCGTTATCAGTTTGTAGTAGTAAACGAAGACATGTCATATCGATCACAAGTTCAATATGGAGTACCACAAGGCTCAGTACTAGGACCGTTACTGTTCACTCTGTACATGCTACCCTTGGGAGATATCATTAGGAAGCATGGCGTTAGTTTTCACTGTTACGCTGATGATACTCAGCTCTATATTTCTTCGCGCCCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU357958 True 496 lncRNA 0.38 1 1908575 1909070

Neighbor

gene id symbol gene type direction distance location
CI01000098_01749704_01753851 NA coding downstream 153557 1749522 ~ 1755018 (-)
CI01000098_01664581_01680008 NA coding downstream 228112 1664315 ~ 1680463 (-)
CI01000098_01584303_01593461 MYLK4 coding downstream 315114 1584263 ~ 1593461 (-)
CI01000098_01484397_01487146 NA coding downstream 421172 1484108 ~ 1487403 (-)
CI01000098_01457139_01462058 NA coding downstream 446256 1457132 ~ 1462319 (-)
CI01000098_01921142_01930710 NA coding upstream 11990 1921060 ~ 1930710 (-)
CI01000098_01954977_01956154 NA coding upstream 45674 1954744 ~ 1957084 (-)
CI01000098_02023150_02033196 ZNF521, ZNF423, ZNF521.S coding upstream 113805 2022875 ~ 2034879 (-)
CI01000098_02053731_02059911 ZNF521 coding upstream 144332 2053402 ~ 2059911 (-)
CI01000098_02092266_02097691 NA coding upstream 183049 2092119 ~ 2097691 (-)
G314806 NA non-coding downstream 2101 1906261 ~ 1906474 (-)
G314795 NA non-coding downstream 25251 1883115 ~ 1883324 (-)
G314792 NA non-coding downstream 25896 1875601 ~ 1882679 (-)
G314778 NA non-coding downstream 37408 1850638 ~ 1871167 (-)
G314761 NA non-coding downstream 58966 1825119 ~ 1849609 (-)
G314823 NA non-coding upstream 40244 1949314 ~ 1949529 (-)
G314858 NA non-coding upstream 88231 1997301 ~ 1997760 (-)
G314828 NA non-coding upstream 168218 2077288 ~ 2089906 (-)
G314877 NA non-coding upstream 261877 2170947 ~ 2188382 (-)
G314882 NA non-coding upstream 264829 2173899 ~ 2175711 (-)
CI01000098_00525874_00530211 NA other downstream 1380020 525701 ~ 530266 (-)
G314830 NA other upstream 154268 2063338 ~ 2100817 (-)

Expression


Co-expression Network