G314191


Basic Information

Item Value
gene id G314191
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 2111630 ~ 2130258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU357231
TGGCTTGTTTGCGACGCGACATCCTACAGAAACCCGCTGAAGATCACACATCTATAGGATATCTATCTCCTCTATATGTGATCATAAAGCTCATTCACTCTAACACGAGATTACATTGTACATTCGAGGTAAAAATCACAGTGGTGTTGGTCAATTCCTGTTGGTCTAGATGTAGCCTATTTGTTTAGAGCAACTGAAGTGTTAAAATGTCATATCCATCTACTAATATCGCGCTGTAAATTCATATACATGTTTGATTTTATCTGTTATAAGTGCGCACGACAGACCTCAAACGCGTTGTAAATGATCGAAAAAAAATTCTAATAAAGCGAAAAACGATTAAAAAATAATTATTTCCTTACAATGCCACGAACTAAAGACTAATTGAGACTGTCAAATTTCTCATTTCATCTGAGAATCAGGACTGAGTCAGTTTAAAAAAAGAGTCAGAGAGGAACATGCGAGCTCCCTCCTCATCACCAACCTGCGAGGTCTCGCTCTGCGCTGTCGCTCCGGTAGTCCACATAATAATGGAAAATGGAAGCGAGGCCCCCAAAGCCATGAGGACGGCTCCAGAGGGGGCCCCATCCCCGCGGGGACGCGCCCTGTGCGTAATCACGGAGGAAATCATTGTCAGCCTGCTGCTCTCAAACACTGACAGAGAGGCATGATTAAAATCCGCGGGAAGTCGGCAAGATCTGGCGTCTGGATCATGGAGTCGCCGGATCCGGAGCCCTGAACTTCTGTCGCGTCTTATGAAGGCGGATTGGTCCCCCTTCTGGTAGACAAGACTCAACGTGTATAGACGTGGCTCGGTGAGAAATGTACAGATATAGCTATTCGAATACATAACCATTTTACATATTTCAGTTGCATATTACTTTTCAAAAAGACATTAAAGTAACCTCCATTGGGTTACTGAACTGTTTTATGCAAATGTTTAAGGATTTTTTCACACTGAGCACAATTTTTTTATTGGGAATTTGCATCGTGCCAAGACGTTAAACGATGTTATGCCCACGGCTTATACATACAATAAACATCTGATGCATACTGCACAAAAAACCTGAAAACACTTTCTCTATTTAGTAAGATCTAATCTGATTGGCTGGTTTTACACAAATTCCTCGAGATGGCACACACACACACAAAAATTCCGTCAGTTCAGTCCGTCTGGAAACAAAGTTCTGCTTCAAAGGTACCGGGTTGATTAACATATACACATTTTATGTTATGCTGTTGTTGTTTTATTCTTAACCTATGTTTTCTGTATTTGTTCAATATTTTTTCCAACTTGTTTGCTGTTTTAGAATAATGTTTTTCCCTTTTTTTTCTTTTTTTTTTTTTTAATTAAAATGGTTTAAATGAATTTTAAAGAACTGGCATAGACATATAAAAAAAAAAAAAAAAAAAACAACAACACACAATGAATTTTATTATAAAAACAAAACACGTTCCATAGCTTATGAACATTGCTGTGTGTGTTTATGTATTTTCACTGATTTTGCTGTAAATAAGGCAGCTGTTTCACTTAAGGCATTGCTGCTATGAAATTGCTTCTGTTAAACTCAGAATGCACAAACGAGTCGACAGGAAATTCTTAAAACGTGTACGTTTTCTCTTTTTTTGTCAAGTGAGTTTTATTCACAATTAGATCACCTGTGCCGAGAATCGAGCCAATCAATGTTCAGTTTGTTCAAATGCTTGTGGCCGAATGAAGAGTTCAGTCTACATTAGCGGGGAAGATTCATCTCTTCATGGGTGATGTATAGAGATCTTGAGAGCACAGTAGCCCTTCATCAGATCACACACAGCTCCAAATGGGAGACACTAGGGCAGGAAGTCAAATCCTCATCTACTGCTGGTAGTTG

Function

NR:

description
translocating chain-associated membrane protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU357231 True 1871 lncRNA 0.39 2 2111630 2130258

Neighbor

gene id symbol gene type direction distance location
CI01000098_02037636_02051827 NA coding upstream 59784 2037600 ~ 2051846 (+)
CI01000098_01960410_01996273 HRH3 coding upstream 115232 1960410 ~ 1996398 (+)
CI01000098_01900523_01905648 ABCF3.S, ABCF3 coding upstream 205675 1900523 ~ 1905955 (+)
CI01000098_01894500_01898605 ABCF3 coding upstream 213025 1894500 ~ 1898605 (+)
CI01000098_01875234_01882514 RPB4, POLR2D, BRAFLDRAFT_113736, POLR2D.L coding upstream 228967 1874547 ~ 1882663 (+)
CI01000098_02167217_02267829 NA coding downstream 36959 2167217 ~ 2267829 (+)
CI01000098_02304073_02309499 RPE65, RPE65A coding downstream 172797 2303055 ~ 2309573 (+)
CI01000098_02447543_02468822 C8A coding downstream 317285 2447543 ~ 2468987 (+)
CI01000098_02542022_02543246 NA coding downstream 409729 2539987 ~ 2543545 (+)
CI01000098_02695754_02697751 NA coding downstream 564370 2694628 ~ 2699606 (+)
G314231 NA non-coding upstream 37863 2070502 ~ 2073767 (+)
G314196 NA non-coding upstream 87703 2020476 ~ 2023927 (+)
G314194 NA non-coding upstream 91237 2015590 ~ 2020393 (+)
G314204 NA non-coding upstream 98913 2012503 ~ 2012717 (+)
G314203 NA non-coding upstream 99256 2011830 ~ 2012374 (+)
G314311 NA non-coding downstream 29179 2159437 ~ 2217714 (+)
G314347 NA non-coding downstream 180642 2310900 ~ 2311099 (+)
G314351 NA non-coding downstream 194397 2324655 ~ 2332298 (+)
G314277 NA non-coding downstream 212927 2343185 ~ 2417594 (+)
G314282 NA non-coding downstream 340163 2470421 ~ 2470997 (+)
G314121 NA other upstream 350658 1755140 ~ 1760972 (+)
G313412 NA other upstream 1245683 864629 ~ 865947 (+)
CI01000098_00274963_00275658 NA other upstream 1836373 274731 ~ 275712 (+)
G314278 NA other downstream 99066 2229324 ~ 2234831 (+)
G314652 NA other downstream 1071262 3201520 ~ 3204360 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016067 NA non-coding NC_007113.7 CM002886.2 1315166 ~ 1331542 (-)