XLOC_011071 (vsig10l)


Basic Information

Item Value
gene id XLOC_011071
gene name vsig10l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 50183190 ~ 50203058 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021596
tgGAAGTTATTTCCCCCATGTTTACAGGTCATCTGTGTTTTCTGACCCTTTCACCTATGGGTCGAGTATCAATTCAAGCACTTGTGGGCACAAATGTGACTCTTGCTGTGTCCCACGCTGGTGCGTCTCAGCCGGAGGTGATGTGGTTTTTGGGAAAACTTCTGGTTGCTAAATGGACCGTTGGTGAAAGTTCACTTCCAGATGCTGCTTCAGGTGTTTTAAAAGCAGAACAGGATGGATCTCTCACCTTCAGAAATGTGTCGATGATTTATAACGGCACATATACTGTTGAAATGAATAAAATCGGGGAGGCAAAGGTCAGCGCTACATTTGACCTCTTTATTTATGATCTCATCATGAATGTCTCCCTTCACACTGACTCAGACGACGCCATTGAGGGTGAAGTGAAGTTCAGTTTATATTACAGCACAATTCAAGGAGAGGCCAAAGAAGTCCAGTGGCTTTTTAATGGGCTCCAGATAAAAGATGGATCTCATTATTCCATCAGCGGGAAGAGACTGACGATAAAGCAGCCCAGCAGGAACGATACGGGCCGATACACTGTATTATTAACCAACCCGTTCAGCTCTGAGGATCATCACAGAAACATCACCGTTCTGTATGGACCTGATATGCCACTTCTCAAGGTCAGTCCTACAAAAGCTGTCTTTGTTTCGGGAGAGTCTCTGTTCCTCTCCTGTCAGGCCGACGGCGAGCCAGCTCCTTCAAACACATGGACTTTCAATGGTGAATCCATTCCTGCGTTTTCACCAGGAACAGTCAGTCTCACTGATGTAAAGACCAATCAAAGCGGCGTTTACACCTGCCTGATGATCAACAGCAGAACTAATGCAGCACTCCAGAGAAACATCACTGTGATCGTCTATGAGTCTCCCAGCGGCGCCCCGCAGTGTTCGGTTCAGACGGTGCCTGGAGGAGCAGCACTGCAGTTCCTCTGTGTTTGGCCAGGGGGCGCTCCGGCAGCGCGAGTGTCTTTCCCCAGCCTGAGCGATGCAGGTGGAGAGGGAGATTACAGCATCACTGTGCAGGACATCCACAAATTAAACAGACAAGAAATCATCTGCACAGCTGAACATCCGCTCAGAAGCACACACTGCAGTGTCTTTCCCTCTGCTCCTGTGGATTTTCTGGCGGTAGTTTCCACCAGTGTGAGTGCAGATGATCAGATGATGGTTCTGATGGTCTGCTCTCCTGAAGCCACACCTGAAGCTCTTGTGTTCTGGATGAAGAGCGGAGAGCGCCTGCAGAATGACCACAAATACCAGATCAGCACAAACACAACTCAGCTCAGGATTCGGGATTTTAATGCCTCTTCTGCAGACCTGGACACCTACACCTGCTCTGCTGTCAACCCTCTTGGAAACAAAACTCTGCACACCACACTGACTGgtcctCAAATCTCCAACTCAAGTGTTTTGTCAAATGAGGATGGTACAGAAGTTACTCTTACATGGGATGTTCCTCTCACCTCTGTTATTACAGGCTTTGACATCCAGATGAAAGGTCCAGAGTTTTCTCAGCCCGATGTGAACACAGCAGATTTCCACACTATACAGATAATGCCGGCGTTCAGCAGAAGCGCAGGCATCTCTGCACTCGACCCTAAATCCACATACTATTTCAGAATCATCCCTAAAGCCGGCAGAACTGCAGGAGAACAGTCGGAGAACCATCGCATCGGGCCAGcTGCTGAACTTAGTGTTGCTGCCGTCGCTGCTTTATCTGCTGGAATCCCCTGTGGTCTGCTTCTGCTCTTCATCCTTATCGGCTTCATCTACTGTGCGACTCAAGACCGAAGATATCCAGTCTCCAGAGCCGTGGAGAAGGTTGTCGTCTCTCAATCGGCTCTCAATCCTCATAATCTCCTGAGAGCAAGATTAAAAACCCCAGCAGATGACAGACTCCAGCAGCCTGAACGAGCCGATCCTGTGTCTTCAGTGGACTCGTCTGTGCGAATGACCACCGCTGTC

Function

symbol description
vsig10l Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSIG10L (V-set and immunoglobulin domain containing 10 like).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-231 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSIG10L (V-set and immunoglobulin domain containing 10 like).

Ensembl:

ensembl_id ENSDARG00000089237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021596 True 1991 mRNA 0.49 11 50183190 50203058

Neighbor

gene id symbol gene type direction distance location
XLOC_011070 lim2.5 coding downstream 1984 50166421 ~ 50181206 (-)
XLOC_011069 nek10 coding downstream 26003 50114739 ~ 50157187 (-)
XLOC_011068 CR855313.1 coding downstream 187596 49995478 ~ 49995594 (-)
XLOC_011067 znf385d coding downstream 336831 49729339 ~ 49846359 (-)
XLOC_011066 efhb coding downstream 536565 49629886 ~ 49646625 (-)
XLOC_011072 etfb coding upstream 11761 50214819 ~ 50229274 (-)
XLOC_011073 LO018246.1 coding upstream 435612 50638670 ~ 50638786 (-)
XLOC_011074 si:ch73-90p23.1 coding upstream 686060 50889118 ~ 50897887 (-)
XLOC_011075 CU855821.1 coding upstream 714855 50917913 ~ 50918908 (-)
XLOC_011076 si:dkeyp-97a10.3 coding upstream 723397 50926455 ~ 50952266 (-)
XLOC_010626 CR392024.2 misc downstream 29288015 20895112 ~ 20895175 (-)
XLOC_011064 NA non-coding downstream 946089 49236408 ~ 49237101 (-)
XLOC_011063 NA non-coding downstream 961097 49215478 ~ 49222093 (-)
XLOC_011062 NA non-coding downstream 998706 49155860 ~ 49184484 (-)
XLOC_011061 NA non-coding downstream 1361845 48820350 ~ 48821345 (-)
XLOC_011077 FP243388.2 non-coding upstream 732132 50935190 ~ 50935306 (-)
XLOC_011078 FP243388.1 non-coding upstream 758188 50961246 ~ 50961362 (-)
XLOC_011080 NA non-coding upstream 875609 51078667 ~ 51080430 (-)
XLOC_011087 CABZ01074290.1 non-coding upstream 1552334 51755392 ~ 51755506 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_00582697_00586449 VSIG10L coding CI01000086 null 582697 ~ 586449 (-)