CI01000106_01444620_01449558 (FLRT2)


Basic Information

Item Value
gene id CI01000106_01444620_01449558
gene name FLRT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000106
NCBI id null
chromosome length 3151683
location 1443163 ~ 1449558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000106_01444620_01449558.mRNA
ATGGGTCGAAGCCTCTTCAGAAAAGGACAGGCAATTACAGGAGGATTACCCAGCGACTTCAACATCGCATACTCTCCACAGAGGCAAGCTTCAAGATCCGCTAAGAACTCCAGTGTGGTGGATTTTATTTTTTATCATTTTTCACCCTTTTTAATTACCTGCACTGTTGTTGTCAAAAAGTTTGCAAAGTATTACAAAATGGAGGTACAGATCCGAATGTGGAATAAAGACCTGCCAACTTTGATCAGCCCATGGATACCGATACTTCTGGGTCTTCACATGCATTTCTCCTGGGCCACAACCTGTCCAGAGGAGTGCCGGTGTGACAGGACCTTTGTTTACTGCAACGAGAGGAGTCTAATGTCAGTGCCTCTGGGGCTAGGAGAGGGTTATAAGACCCTCTACCTCCACAACAATCAAATCAACAATGCTGGATTTCCCCTGGAAATGCACAACGTTGCCTCTGTGGAGACGGTGTATCTCTATGGCAACCAGCTTGACGAATTCCCTGTCAATCTTCCCAAAAATGTGCGGGTGCTCCACCTGCAGGAGAATAACATTCAGACTGTGTCCCGGGCCGCCCTCGCGCAGCTGCTACGCCTGGAGGAGCTCTATCTGGATGACAACTCCATCTCCACCGTGGGTGTGGAGGAGGGGGCCTTCAGGGAGGCCATCAGTCTCAAGACCCTTTTCCTTACCAAGAACCACCTGAGCAGTGTCCCCGTCGGGCTCCCTGAGGAGCTGAGAGAGCTGCGGTTGGACGAGAACCGCATTGCACTTATAGCCGAGGACGCATTTGAGAATGTGACGGGCCTCGAACGCCTCCTCCTGGATGGGAACTTGCTCACGGATGAGGGCATCGCTCCCGGTGCACTCCAGACCCTCGTAAATCTCAAAACGCTGTCGATGGCGCGCAACTCCCTCACGGTTCCTCCTCCTAATCTGCCTGCCGAGTTTCTAGTCAAGCTCAACTTGCAGGATAATCAGATGAATGAGATTCCATTGACAGCCTTTCATGGCCTTCATCGCTTGGAGAGACTGGATATTTCAAACAACCAGCTGCAGTCTCTCACACAGGGGGTCTTTGACGGCCTCCGCGGTCTGAGACAGCTCACTGTTCGAAACAACCTTTGGCTCTGTGACTGCAACATTAAATGGGTCATACTGTGGTTAAAGTCCCTGCCAGCTACCCTCAATGTCCGTGGCTTCATGTGCCAGAAACCAGAGAGGGTACGTGGCATGGTAATAAGAGAGCTAACCCTGGAGCTCATCCAGTGTCCTAACAGCACCACCACAGTCCCACAGCCCACACTGCTCTCTTCCTCCACCGCTGAGTCAGCCACTCAAACGGCCTTCACACCCGCACGCTCCCAGCCTACACCCACCCCTTCGCCTCTCACAATTCTCCCACCGACTGCAGGCGAAGACAGGGAACAGAGGACGAACGACCCGGTCGGCCCGAGGCAGGAGTCTCTACGCGTTTCCTTTGCGGTGCTAAACAGTTCGTGCATTCAGGTAAGCTGGGTATCGACATTCGCCGTCACAGCCTATAAGGTGACCTGGGTCAAGATGGGTCATAGTTTAATAACAGGCCCCATGCAGGAGTCACTTGTGGGGGGCGAACGTGAGGGAATCGCACTGGCAAACCTGGAGCCCAAGTCCACCTATCGTATTTGCGTAGATCCGCTGGACGCGCTTAACAATTACCACCCAGGAGATGATACGATTTGCTCGGAGGTGATGACGAAGTCCGCTTCCTTTCACTCCGGTGATAACACCACTGGGCCCGAGCAGGCGACCCAGCAGGACCCCAGCTCGCCTCTCCTACTGGCTGGCCTGATTGGCGGGGCGGTGCTTATGGTCCTGGTGGTCCTGTTGAGCATATTCTGCTGGCACATGCACAAGAAGGAAAGGTCAGATTCGTCAAAATGGAAATACAGTCGGGGCAGAAGAAAAGACGACTACTGCGAAGCAGGGACTAAAAAGGATAACTCTATTCTGGAAATGACTGAGACTAGCTTTCAGATAGTTTCTTTGAATAATGAACAGCTGCTCAAGGGGGACTTTCGCATTCAACCGATTTACACCCCTAATGGGGGTGTTGGATACAGAGACTCTCAAAGGAGAAACAATAGCACAGCGTACTGCAAAAACAGTGTTCCAGAATCTGATACATGCCATAAATGATGATTTTAAACAGATAACATCATTTGTATTTAGATCTGACTCTTAAACGCACTGTATTTCAGAAGACAGGATGTAAAATATGTAATTTATATTCTGAACAATATCGCCTTCTTTTTTTATCGCTTAGTAAAACTAAAATTGATTTAAGAATATTTACTTTCTATGTTCTGTTTCTACAATCCAAGCTCATAAAAATATAGTAAGTGGATCTTAGCAACTGGCAATCTTTAAGCACAAATCAATGTCAAGTGCCCCTTTTTTTAGGAAATGAAGGAATGGAAGGAGTGTGTTGTGTCTTTTTAAAGGTTTAAAAAAGTGAGGATGAGTAAGCAGTGCTCACTAGCACCACAAGGTGGCGTCTGTTCTCATCACCACTATTATTATGACATCTCAAGCTATACTCTTTGATCCAGCATCTCACATATTTATTTCACAAGGACTGAACGCTGACAGTTGCTGCCAAACAGCTGAAAACAAACCTTGGTTGATACAAGACTAGAATGATATAAGGAAATTCAGCATCAGGGTTGATTTCCTCAGCAGTCTTTCTGTACAGAGATATAAAACGTTCTATCAGCTCTCTCACACTGCATTAGATCTGCTTCAGTGAGCAAAATATCTTCACCATAGAATATTGTTTAGTGCTGTTATTCAATGTTTGCATAATAATTGCATTTAGGCTTAAGGAGATACAAAGGCTACATTTGCTTGTGTACTGCATACATTTTAGTTTGAAAGATCTTTACAAATACAAACAGTCAAGTCAACATGTTACAGGCAGTGTTGGGTAAGTTACTATAGAAAAAAAAAAATAATTACTAGCAAGTAATTACATCTTCAACAGTATAATTAGATTACTGTACTAATTACTCTCTCTAAAAACATACATTTTAGACATTAAATCCATTATCAGGAGTCTGTAAATAAATTACGTTAAGAGTAATACCTTTCTTTTACTTTTTCAAGGGAAAAGTAATTAAATTGCAGTAATTAATTACTTAATAATGCATTACATCCAACACTGGTTACAGGTCCACTTTAAATCAACTGATTGTAGGGCTCATCTAATACTCATCTAATATATATATATATATATATATATATATATATATATACTTCCCATAATGTTTGTTTAAAGCGGCAGTCTGTAAGTTTTGCCTCTTTGTCGCCATCTCTGTTTGAAACCTGCAATTACAGTTATTTGCGGAATTATCTTTACGCATGTAAACAGACGTGACGTAATGATGCAAAGACGAACGGCTACATGCTTGAATTTCCCATGGAAACCTACCAGTATCACCCGAATTAGAAAAAAAAAAAAGATTTTGGATCATTTTTGACCAAAAAAAAGTTAGGGAATGCAGCTTTAAGGTTAAACACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCTCTGAACGTTAGGAATTGACTAAAATAAA

Function

symbol description
flrt2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain; neurons; pronephros; and solid lens vesicle. Orthologous to human FLRT2 (fibronectin leucine rich transmembrane protein 2).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16362 FLRT; leucine-rich repeat transmembrane protein FLRT

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000106_01444620_01449558.mRNA True 3644 mRNA 0.44 2 1443163 1449558

Neighbor

gene id symbol gene type direction distance location
CI01000106_01355347_01366777 GALCB coding downstream 76386 1354893 ~ 1366777 (-)
CI01000106_01336500_01348232 AK7B coding downstream 94931 1336334 ~ 1348232 (-)
CI01000106_01259364_01269803 VRK1 coding downstream 173360 1259225 ~ 1269803 (-)
CI01000106_01177461_01184868 NA coding downstream 258091 1177432 ~ 1185072 (-)
CI01000106_01140169_01140394 NA coding downstream 301265 1139367 ~ 1141898 (-)
CI01000106_01557772_01560623 NA coding upstream 108199 1557757 ~ 1560880 (-)
CI01000106_01661917_01663941 GSC coding upstream 212095 1661653 ~ 1664118 (-)
CI01000106_01716140_01741037 DICER1 coding upstream 265764 1715322 ~ 1741037 (-)
CI01000106_01790757_01799186 CYP26C1 coding upstream 340163 1789721 ~ 1800078 (-)
CI01000106_01854506_01862988 REEP3A coding upstream 404654 1854212 ~ 1862988 (-)
G319029 NA non-coding downstream 52212 1390671 ~ 1390951 (-)
G319007 NA non-coding downstream 93639 1349322 ~ 1349524 (-)
G319006 NA non-coding downstream 93965 1348977 ~ 1349198 (-)
G318904 NA non-coding downstream 169039 1272760 ~ 1274124 (-)
G318899 NA non-coding downstream 185588 1255775 ~ 1257575 (-)
G319067 NA non-coding upstream 5466 1455024 ~ 1455229 (-)
G319068 NA non-coding upstream 9153 1458711 ~ 1458969 (-)
G319092 NA non-coding upstream 66245 1515803 ~ 1516035 (-)
G319142 NA non-coding upstream 167215 1616773 ~ 1616979 (-)
G319653 NA non-coding upstream 303428 1752986 ~ 1756536 (-)
CI01000106_00524817_00538057 SLIRP other downstream 904207 524236 ~ 538283 (-)
G318540 NA other downstream 907610 535495 ~ 535553 (-)
CI01000106_00012994_00243714 NRXN3A, NRXN3 other downstream 1337479 12994 ~ 243714 (-)
G319941 NA other upstream 1242366 2691924 ~ 2692406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location