CI01000106_01259364_01269803 (VRK1)


Basic Information

Item Value
gene id CI01000106_01259364_01269803
gene name VRK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000106
NCBI id null
chromosome length 3151683
location 1259225 ~ 1269803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000106_01259364_01269803.mRNA
GAGCCAAGTGACAATGGCCCTCTCTTCTCTGAACTGAAGTTCTACATGCGAGCTGCCAAACCTGATCTAATTGGGGCTTGGATGAAGTCAAGGAAAATTGAGTATTTGGGAGTTCCAAAATATTGGGGCTCTGGTTTTCATGAGAAAGGTGATCTACAGAAGAAATTTGAGGAAAACGGAAAGAAATTTCCAAGGAAACTGGTTCTTCAGCTGGGCCTCAGACTTCTTGACATTCTGGAGTACATCCATGACCATGAATATGTGCATGCAGACATCAAAGCCTCCAACCTTCTTCTGTCCTACACCAACCCCAATCAGGACATACGCAGTATTGGGACATCATTAAGGAAGAATGTTAACCTCGTAGCATTCACCTGGTCCAGTAAAATGGTATATTTAGTGGATTATGGATTGGCCTATAGATACTCTCCTGAAGGAGTGCCAAAGGAGTACAAAGAAGACCCAAAGAGGTGTCATGACGGGACCATTGAGTTCACTAGTATTGATGCGCACAAAGGAGTCGCCCCTTCAAGAAGAGCAGACCTGGAAATCATGGGTTACTGCATGATCCAGTGGCTTTGTGGCCGTCTTCCCTGGGAGGACAAACTTCAGGACCCACTGTATGTCAGAGACTCCAAACTTCGGTGTAGAGACAATATTGATGAGTTCTTGAAAAGCTGTTTCACTTCAGAAAATAAACCAGTCGCTGATGTGATGGCAGTTCTTAAGCCCTGTGACAGCCGCGCGGCAGACGGCGAGATCCCTCCTCAGGCTGTTGTCTTGTGCGTACACGGCGCATCACAACACCGAGAGGAAATGGGGAAGTTCATGCAAGAGGTCAAGGCTCTCGGATACACAGACAAGCCAGATTATGCAAAACTGCGAGGTATTTTCCAGCAAGGCCTGAAGACCATAGGGGCAACAGATGACAAAAAACTGGACTTCACCATGTCGACTAATGGCACGGGCCCGCCCTCTGTCAAGGTCCTGAGTGCCTGTGTTTATTCCCTGCTAATGTATCACAAATTTGCTGACACGGTAACCTTGGAGTCGGCGCGGCCCGACAATCAGCGAGCCGCACTTACGACGGGAGGGGACGGACTCTCCTCGCTTCCCACAATGCAGTTTGCATATGGAAGGTGCCACCAGGGAGCTGGCCCATGCCAGCTGAGGGTTACCTGCCCACTGCCGTTATTGTATGTAATTATCGAGCCAATCTGTTCAGCTCAGCAGGGTCTGGATGGTAATCATGAGGCAGCAATTGGCAAAATGGAAGGGAAATGTGAGGGGGCTCCCAAGCGAAAGAAAGCAGAGGAAAAAGGCCAGTCTGCTGATGAAACCGATGGCGCTCCGGCAAAGAAGAGGCGAGCTCCACAGAAGAAGGAAGTGAATGGGGCTAAAAAGGCGGCGAGTCCTGTGAAGCGGCCGGCGAAGAAAGAAGCTCAGGCCTCCTCTGAGCCAGCGGTGAAGAAAAGCAGAGGAAGGCCTAAGAAGAACTCTTAATCCCCTTCGCACTCTAGTTCAAGTTGTTTCCTTTTTGTATCTTTTAAATTGTCTGGTCTGTATTTGTTCTCTGTGGTTGCATTTTCTTAAACTTTAGCAGGGTGTTGGGCACACTCTCTCACAGTGAAATGATAATAAA

Function

symbol description
vrk1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in Golgi disassembly and peptidyl-serine phosphorylation. Predicted to act upstream of or within cell division and protein phosphorylation. Predicted to be located in Golgi stack. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 1A. Orthologous to human VRK1 (VRK serine/threonine kinase 1).

GO:

id name namespace
GO:0005795 Golgi stack cellular_component

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000106_01259364_01269803.mRNA True 1642 mRNA 0.49 13 1259225 1269803

Neighbor

gene id symbol gene type direction distance location
CI01000106_01177461_01184868 NA coding downstream 74153 1177432 ~ 1185072 (-)
CI01000106_01140169_01140394 NA coding downstream 117327 1139367 ~ 1141898 (-)
CI01000106_00987482_00991346 NA coding downstream 267567 987045 ~ 991658 (-)
CI01000106_00972070_00983066 NA coding downstream 274712 972052 ~ 984513 (-)
CI01000106_00830601_00831355 NA coding downstream 427821 829696 ~ 831404 (-)
CI01000106_01336500_01348232 AK7B coding upstream 66531 1336334 ~ 1348232 (-)
CI01000106_01355347_01366777 GALCB coding upstream 85090 1354893 ~ 1366777 (-)
CI01000106_01444620_01449558 FLRT2 coding upstream 173360 1443163 ~ 1449558 (-)
CI01000106_01557772_01560623 NA coding upstream 287954 1557757 ~ 1560880 (-)
CI01000106_01661917_01663941 GSC coding upstream 391850 1661653 ~ 1664118 (-)
G318899 NA non-coding downstream 1650 1255775 ~ 1257575 (-)
G318896 NA non-coding downstream 4112 1249330 ~ 1255113 (-)
G318903 NA non-coding downstream 10076 1244411 ~ 1249149 (-)
G318902 NA non-coding downstream 18845 1238795 ~ 1240380 (-)
G318901 NA non-coding downstream 37135 1220640 ~ 1222090 (-)
G318904 NA non-coding upstream 2957 1272760 ~ 1274124 (-)
G319006 NA non-coding upstream 79174 1348977 ~ 1349198 (-)
G319007 NA non-coding upstream 79519 1349322 ~ 1349524 (-)
G319029 NA non-coding upstream 120868 1390671 ~ 1390951 (-)
G319067 NA non-coding upstream 185221 1455024 ~ 1455229 (-)
CI01000106_00524817_00538057 SLIRP other downstream 720269 524236 ~ 538283 (-)
G318540 NA other downstream 723672 535495 ~ 535553 (-)
CI01000106_00012994_00243714 NRXN3A, NRXN3 other downstream 1153541 12994 ~ 243714 (-)
G319941 NA other upstream 1422121 2691924 ~ 2692406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012026 vrk1 coding NC_007128.7 CM002901.2 18773961 ~ 18797245 (-)