XLOC_011116 (cyp11c1)


Basic Information

Item Value
gene id XLOC_011116
gene name cyp11c1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54459135 ~ 54471235 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021645
caggaGGACAGACGCTCAGGATACTCTGCTGTTCTCCAGTTCTCAGTGTAGTGTGTGTGAGATCAGCATCGGCAGCATGTTCTCCTCCTGCGCTGGGTCTGTGTGTGCGCGTCCGcatctgtgtgtgcgtgcatctgtgtgtgtgcgtccgcTTCACCAAAGCTCCAGATCCGCTGGAGCCGCTCGACTCTTCCAGGAGATCCCGGACACCGGCAGCAACGGCTGGATGAACCTGCTGCGCTTCTGGAGGGACGGACGCTTCAGCcgcatgcacaaacacatggAGGAGTCCTTCAGACGCCTCGGGCCCATATACAGagagcACCTGGGCTCTCAGAGCAGTGTGAACATCATGCTGCCCATGGACACCGGTGAGCTGTTCCGCTCGGAGGGTCTTCACCCGCGCCGCATGACCCTGCAACCCTGGGCCACACACCGAGAGACACGCAGACACAGCAAAGGAGTCTTCCTCAAgaacgGGACGGAGTGGCGTGCTGACCGTCTGCTGCTGAACCGTGAGGTGATGGTGTCCTCGTCTGTCCACCGCTTTCTCCCGCTGCTGGATGAAGTGGCGCAGGATTTCTGCCGTTCGCTGCGGCGCCGCGTTCAGGCGGACGGGTTCGAGAAGGCGGGGCAGCACACACTGACCCTTGACCCCAGTCCTGACCTCTTCCGCTTCGCATTGGAAGCGAGCTGTCACGTTCTGTACGGCGAGCGGATTGGCCTGTTCTCCTCGTGCCCGTCTGACGAATCAGAGCGCTTCATTTCGGCTGTGGAGCGAATGCTGGCCACGACCCCCCCGCTGCTGTACCTGCCCCCCCGCCTGCTGCTGCGGCTGCGCGCCTCCCTGTGGACAACACACGCCACTGCATGGGACGACATCTTCAGCCacgcgGAGCAGCGTATCCAGCGTAGCTATCAGCGTCTGCAGGCGAGGCCGTCTGCTGCTCCAGACTGCAGCTTCCCGGGGGTTCTGGGAAAGCTGATGGAGGCGGGACAGTTATCATTAGAGCTGATCAGAGCCAACATCACTGAGCTGATGGCCGGCGGAGTTGacacgacggCCGTGCCGCTGCAATTCGCTCTCTTTGAGCTGGCGCGTAACCCTGATGTGCAGGAGTGTGTGCGCGCGCAGGTTCTGTCGTCATGGCAGCAGGCGTCTGGAGACCCTCTGAAGGCCCTGCAGGGGGCGCCGCTGCTGAAGGGGACCATCAAGGAGACACTGAGGTTGTATCCTGTGGGAATCACCGTTCAGAGGTATCCAGTCAGAGACATCGTCCTGCAGAACTACCACGTGCCGGCAGggacgCTGGTGCAGGTGTGTCTGTATCCCCTGGGTCGTTCCGCTGAGGTGTTCTCCAGGCCGGAGTGTTTCGACCCCAGCCGCTGGAGCGCAGACGCAGACGCCGGGTCTGCAGGAGGCTTCCGCTCGCTGGCGTTCGGCTTCGGCTCCAGGCAGTGTGTGGGACGCAGGATAGCAGAGAACGAGATGCAGCTGCTGCTCATGCACattCTGAGGACCTTCAAGCTGACGGTTTCGTCCACAGAAGAGCTGAGCACTAAATACACACTGATCCTGCAGCCCGAGTGTCCACCGAGAATCACcttcagcacactcacacaccAGCACTGATCCATCAGtcaatcatcaatcaatcaatcaatcaatcaatcagtcgtCAGTCGACCCCGCGGCTGTGCTTGTTCAGGAGTTCTGAATGTGGATTATCAGCTGCTGTTTCATGACAACACAATAAATCAACTGATCAAACACTC
>TCONS_00021646
GAAAAAGGAGAGATCATCCTGAAAACAGCAAGCGAGTGTTTTATTGGCCTGCAGAGCGACGCATCACTGATGCAGACCCTGAGTGCATCTCTGTGtgcagATGCGAGTGTGTGAGACCTGTTAAACCTCCTCATCTATAAATCATGATCTGTCcagactctctcacacacacactctctcatgcttacacacacacactgctgatccAGATCTGAGTGTAAGGCCGTTCTCCAAGTCCTCATGGAGTCTGTGGTGAAGAGGTCTCTCCTGGCGCCCATGAAGACGCTCCAGTGCTGTGTGAGCGGCGACAAGCAGCAGGCCAGCAGATCACAGGGTCAGAGGTCAAAGGTCACCCGCGTGCAGGACCCACGTGTGCTGCGATCCTATGAGGCTGAGCTGCAGAAAGAGAGGAAGTTGAGGGAAGCGATGAACGCTAAGAAGAACGCAGAGAGAGCTGCGATGAGGGCTCATTTCAGGAGGAAATACCAGCTGAgccagAATGCCAAGGACTCTGCGCAGCTACGTGCCGTGGGTGGGAAGGTGTTTCTGTCTGGAGATCTGGCCAGGATGGTTCGCCCCGACGCACCTGAGAAAGACGATGGTTTCAATTTGATCAGAGCCTTTCAGGGCCTCAAATTCAGTGGACCGATGTTCACCGGCAGCAAACACAGCAGAGCGGACAAAACAACCAATGAAGAGCCGTGCAGAGTCATcaggaGGACAGACGCTCAGGATACTCTGCTGTTCTCCAGTTCTCAGTGTAGTGTGTGTGAGATCAGCATCGGCAGCATGTTCTCCTCCTGCGCTGGGTCTGTGTGTGCGCGTCCGcatctgtgtgtgcgtgcatctgtgtgtgtgcgtccgcTTCACCAAAGCTCCAGATCCGCTGGAGCCGCTCGACTCTTCCAGGAGATCCCGGACACCGGCAGCAACGGCTGGATGAACCTGCTGCGCTTCTGGAGGGACGGACGCTTCAGCcgcatgcacaaacacatggAGGAGTCCTTCAGACGCCTCGGGCCCATATACAGagagcACCTGGGCTCTCAGAGCAGTGTGAACATCATGCTGCCCATGGACACCGGTGAGCTGTTCCGCTCGGAGGGTCTTCACCCGCGCCGCATGACCCTGCAACCCTGGGCCACACACCGAGAGACACGCAGACACAGCAAAGGAGTCTTCCTCAAgaacgGGACGGAGTGGCGTGCTGACCGTCTGCTGCTGAACCGTGAGGTGATGGTGTCCTCGTCTGTCCACCGCTTTCTCCCGCTGCTGGATGAAGTGGCGCAGGATTTCTGCCGTTCGCTGCGGCGCCGCGTTCAGGCGGACGGGTTCGAGAAGGCGGGGCAGCACACACTGACCCTTGACCCCAGTCCTGACCTCTTCCGCTTCGCATTGGAAGCGAGCTGTCACGTTCTGTACGGCGAGCGGATTGGCCTGTTCTCCTCGTGCCCGTCTGACGAATCAGAGCGCTTCATTTCGGCTGTGGAGCGAATGCTGGCCACGACCCCCCCGCTGCTGTACCTGCCCCCCCGCCTGCTGCTGCGGCTGCGCGCCTCCCTGTGGACAACACACGCCACTGCATGGGACGACATCTTCAGCCacgcgGAGCAGCGTATCCAGCGTAGCTATCAGCGTCTGCAGGCGAGGCCGTCTGCTGCTCCAGACTGCAGCTTCCCGGGGGTTCTGGGAAAGCTGATGGAGGCGGGACAGTTATCATTAGAGCTGATCAGAGCCAACATCACTGAGCTGATGGCCGGCGGAGTTGacacgacggCCGTGCCGCTGCAATTCGCTCTCTTTGAGCTGGCGCGTAACCCTGATGTGCAGGAGTGTGTGCGCGCGCAGGTTCTGTCGTCATGGCAGCAGGCGTCTGGAGACCCTCTGAAGGCCCTGCAGGGGGCGCCGCTGCTGAAGGGGACCATCAAGGAGACACTGAGGTTGTATCCTGTGGGAATCACCGTTCAGAGGTATCCAGTCAGAGACATCGTCCTGCAGAACTACCACGTGCCGGCAGggacgCTGGTGCAGGTGTGTCTGTATCCCCTGGGTCGTTCCGCTGAGGTGTTCTCCAGGCCGGAGTGTTTCGACCCCAGCCGCTGGAGCGCAGACGCAGACGCCGGGTCTGCAGGAGGCTTCCGCTCGCTGGCGTTCGGCTTCGGCTCCAGGCAGTGTGTGGGACGCAGGATAGCAGAGAACGAGATGCAGCTGCTGCTCATGCACattCTGAGGACCTTCAAGCTGACGGTTTCGTCCACAGAAGAGCTGAGCACTAAATACACACTGATCCTGCAGCCCGAGTGTCCACCGAGAATCACcttcagcacactcacacaccAGCACTGATCCATCAGtcaatcatcaatcaatcaatcaatcaatcaatcagtcgtCAGTCGACCCCGCGGCTGTGCTTGTTCAGGAGTTCTGAATGTGGATTATCAGCTGCTGTTTCATGACAACACAATAAATCAACTGATCAAACACTC

Function

symbol description
cyp11c1 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Acts upstream of or within cortisol metabolic process. Predicted to be active in mitochondrial inner membrane. Is expressed in brain; endocrine system; and gonad.

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0006700 C21-steroid hormone biosynthetic process biological_process
GO:0071375 cellular response to peptide hormone stimulus biological_process
GO:0006704 glucocorticoid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0034650 cortisol metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070828-1 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Acts upstream of or within cortisol metabolic process. Predicted to be active in mitochondrial inner membrane. Is expressed in brain; endocrine system; and gonad.

Ensembl:

ensembl_id ENSDARG00000042014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021645 False 1776 mRNA 0.60 9 54459135 54465271
TCONS_00021646 True 2489 mRNA 0.58 13 54459135 54471235

Neighbor

gene id symbol gene type direction distance location
XLOC_011115 pklr coding downstream 3562 54450407 ~ 54455573 (-)
XLOC_011114 NA coding downstream 19979 54436976 ~ 54439156 (-)
XLOC_011113 osr2 coding downstream 53159 54402310 ~ 54405976 (-)
XLOC_011112 CABZ01111454.1 coding downstream 101935 54355842 ~ 54357200 (-)
XLOC_011111 NA coding downstream 162691 54291662 ~ 54296444 (-)
XLOC_011117 clk2b coding upstream 3386 54474621 ~ 54498109 (-)
XLOC_011118 NA coding upstream 55174 54526409 ~ 54532090 (-)
XLOC_011119 NA coding upstream 123675 54594910 ~ 54597421 (-)
XLOC_011120 spag1b coding upstream 162003 54633238 ~ 54640315 (-)
XLOC_011121 NA coding upstream 290662 54761897 ~ 54767193 (-)
XLOC_010626 CR392024.2 misc downstream 33563960 20895112 ~ 20895175 (-)
XLOC_011107 NA non-coding downstream 479452 53911907 ~ 53979683 (-)
XLOC_011106 NA non-coding downstream 591143 53866294 ~ 53867992 (-)
XLOC_011104 NA non-coding downstream 759692 53686314 ~ 53699443 (-)
XLOC_011128 NA non-coding upstream 527751 54998986 ~ 54999993 (-)
XLOC_011131 NA non-coding upstream 720937 55192172 ~ 55204179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location