XLOC_011121


Basic Information

Item Value
gene id XLOC_011121
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54761897 ~ 54767193 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021649
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATGGAAGCAAGACGCCAGAGCCGGATTTCTGTACATTCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATcaactttttatgaCAACCGATGTCCATCTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGG
>TCONS_00021650
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATGGAAGCAAGACGCCAGAGCCGGATTTCTGTACATTCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATcaactttttatggtaagtaactgCAAAACATTTATCACTACACATTACAGTAAACAGTCTCTTAACTGAATATGTTGCTCTGAAAAATCTAAATAGTCCCAAAAAaggaaatttactcactattcactCACCATGTTTCCATGgtcccaaacctttgagttttttttatctgt

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007498 mesoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0060914 heart formation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048645 animal organ formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097758

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021649 False 296 lncRNA 0.44 3 54761897 54767193
TCONS_00021650 True 363 processed_transcript 0.39 2 54765501 54767193

Neighbor

gene id symbol gene type direction distance location
XLOC_011120 spag1b coding downstream 121582 54633238 ~ 54640315 (-)
XLOC_011119 NA coding downstream 164476 54594910 ~ 54597421 (-)
XLOC_011118 NA coding downstream 229807 54526409 ~ 54532090 (-)
XLOC_011117 clk2b coding downstream 263788 54474621 ~ 54498109 (-)
XLOC_011116 cyp11c1 coding downstream 290662 54459135 ~ 54471235 (-)
XLOC_011122 khdc4 coding upstream 18071 54785264 ~ 54800202 (-)
XLOC_011123 zbtb7b coding upstream 37622 54804815 ~ 54810464 (-)
XLOC_011124 kdf1a coding upstream 123642 54890835 ~ 54919260 (-)
XLOC_011125 tpbgl coding upstream 158244 54925437 ~ 54928813 (-)
XLOC_011126 tmem222a coding upstream 163554 54930747 ~ 54942534 (-)
XLOC_010626 CR392024.2 misc downstream 33866722 20895112 ~ 20895175 (-)
XLOC_011114 NA non-coding downstream 322741 54436976 ~ 54439156 (-)
XLOC_011111 NA non-coding downstream 465453 54291662 ~ 54296444 (-)
XLOC_011107 NA non-coding downstream 782214 53911907 ~ 53979683 (-)
XLOC_011128 NA non-coding upstream 231793 54998986 ~ 54999993 (-)
XLOC_011131 NA non-coding upstream 424979 55192172 ~ 55204179 (-)

Expression


Co-expression Network