XLOC_011125 (tpbgl)


Basic Information

Item Value
gene id XLOC_011125
gene name tpbgl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54925437 ~ 54928813 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021658
gaaagatcaatgtattgaaaactgctgatttacGGGTGATTTATGAGTGTACAACAGCAAACCaaacaatatattgctttaaagtattcaaaatgttcataaaagtcacttttcccaactttttaaagttgttaaAAGATAGATTAAGgtcacataatgcaattcaaaccagggaaataaaataaaaactgctaatttgCGATGTTTCACGGTGCAGCTCTGCTGAGAGTGCATGTGGTGTGCTCAGCGTGTGTTGGGTATGATAGGTGTTTGGAGTGCGTGAGCTCCACCCACCGCATCCCCAGCTGTGCGGTGGCCGGGCTGTGAGCGTCTTTCCTCGGGCAGCGCTGCTCAGACGCGCCGGTCTGTGAGTCGCAGAGCTCGGATGATGCCGCTGACGCTCGCCTGCGCGTCGCTCCTGCTGATGTGCGTCTGCTGGAGCGTCGCGTTGTGTCCGCCGCGCTGTGTCTGCTCCGGGACGCCTCTCACCGTGCGCTGCTCGCCAACTGACCTCCCGGGACTCACCGGCACTCTGAGCCGCTCCGGAGACTCCCTGCAGCAGCTACAGCACAGCAGCTTCCGCGGGCTCCGGAACACCACACTGCTGGAGCTCAGCCACAACCGCATTACGGAGATCGGCTCTCATGCGTTCTCGTCTCTGCTAATGCTGCGTTCGCTAATCCTGAACAACAACGCTCTAGTCCTGATCCATCCCGAAGCGTTCTCCATCCCCGGGAGTCCTCTAGAAGAGCTCAGTCTGCGCTCGTCTCTGTATAACCACACATCTCTGACGGACCTCATAACCGCGCTGCGATGGGGGGAATTATTCAACCTGCAGCGGCTCGACCTGTCGGGCAACCGGCTCGTCCTGCTGCCACCGGGGATGTTCACTCCGCTGCCAAGACTACAGTATCTACACCTGAACAACAACTCTCTGGTGGCCGTCTACAACTGCACATTCACTGGTGTCGAAAATCTTCTGGAGCTGGATTTGAGTAGGAATGCATTCAAAATGATCAGCGGCGAAGGTCTGCATGAGTTGGAGCGACTCAGTTTGGTGCGACTAATGTTGAGTCAGAACCCTTACACATGCACATGTGAAATGCTTGAGTTTGTGCATTGGTTGAACAGCTCGAAGGTTAAGATTGGCGATGTGGAGAGGTTGAGCTGTGAATCCCCTGCTGAAATGCGTAATGTGTCTTTACGGGTTATTAATGCGCAGGTGTTGGGGTGTTACGGTGAAGCGCAGAAAGTCAATACCGATTTGTCGCTGCATACGTCTTATGTGTTTCTGGGATTAGTGCTGGGATTCGTGGGCATGGTGTTTCTGTTGGTGGTTTACCTCAACCGAAAGGGCATTAAGAAGTGGATCACGGATATACATGAAGCCTGTCGAGATGTGCTGGAGGGGTATCATTATCGATACGAACTTGACTCTGATCCACGACTGGGACATGTTTCAAACAGAGACCCGCGTAAGGCGCGTGCTCCTACTGACGGTGGTATTTCACAGATTCCATCTGATGTGACTCTGTAAAAGGACTGTAAACAACTGCATAGTGGAAATACTTCAATGTATATTATGACCTGATATTTCCAGCACATGcttattggaaatatgtgccacaaactattttttttttttttaaatacatcacaTGTGATTTGTTTcacattttagatgacaaatccactagagagcgctgtctgcatttttgcgaatctgaaatacgtcaCTAATAGTGaattttgttgcacgttttagacaacagatccactagagggcgctgtctacatgtttgcaaatctgaaatgctttacttagggtacattttgttgtacatttcaaataacaaatccactagagggcgctgtctgcattttttgcgaatctgaaatacgtcaCTAATAGtgcattttgttgcacgttttagacaacagatccactagagggcgctgtctacatgtttgcaaatctgaaatgctttacttagggtacattttgttgtacatttcaaataacatatccactagagggcgctgtctacatttgtggGAATCTCAAATACGATATTTGGAGTGCGTTTCATAGTTTGTGTATTAGTTGAACAGTTCGAAGGTTACGATTGCTGATGT

Function

symbol description
tpbgl Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TPBG (trophoblast glycoprotein).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120209-2 Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TPBG (trophoblast glycoprotein).

Ensembl:

ensembl_id ENSDARG00000114338

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021658 True 2136 mRNA 0.47 2 54925437 54928813

Neighbor

gene id symbol gene type direction distance location
XLOC_011124 kdf1a coding downstream 6177 54890835 ~ 54919260 (-)
XLOC_011123 zbtb7b coding downstream 114973 54804815 ~ 54810464 (-)
XLOC_011122 khdc4 coding downstream 125235 54785264 ~ 54800202 (-)
XLOC_011121 NA coding downstream 158244 54761897 ~ 54767193 (-)
XLOC_011120 spag1b coding downstream 285122 54633238 ~ 54640315 (-)
XLOC_011126 tmem222a coding upstream 1934 54930747 ~ 54942534 (-)
XLOC_011127 wdtc1 coding upstream 18955 54947768 ~ 54978981 (-)
XLOC_011128 NA coding upstream 70173 54998986 ~ 54999993 (-)
XLOC_011129 zgc:114181 coding upstream 74308 55003121 ~ 55028791 (-)
XLOC_011130 cmc1 coding upstream 176732 55105545 ~ 55122776 (-)
XLOC_010626 CR392024.2 misc downstream 34030262 20895112 ~ 20895175 (-)
XLOC_011119 NA non-coding downstream 328016 54594910 ~ 54597421 (-)
XLOC_011118 NA non-coding downstream 393347 54526409 ~ 54532090 (-)
XLOC_011114 NA non-coding downstream 486281 54436976 ~ 54439156 (-)
XLOC_011111 NA non-coding downstream 628993 54291662 ~ 54296444 (-)
XLOC_011131 NA non-coding upstream 263359 55192172 ~ 55204179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_02893723_02895660 NA coding CI01000086 null 2893421 ~ 2895833 (-)